Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10385 898 / 0 Vps51/Vps67 family (components of vesicular transport) protein (.1) AT5G49830 753 / 0 EXO84B exocyst complex component 84B (.1.2.3) AT1G10180 316 / 3e-96 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G249900 [exp] 782 / 0 AT5G49830 1072 / 0.0 exocyst complex component 84B (.1.2.3) Potri.008G009100 [exp] 771 / 0 AT5G49830 1070 / 0.0 exocyst complex component 84B (.1.2.3) Potri.012G120000 [exp] 311 / 2e-94 AT1G10180 809 / 0.0 unknown protein Potri.015G118500 [exp] 293 / 1e-87 AT1G10180 788 / 0.0 unknown protein Potri.015G119300 [exp] 241 / 4e-70 AT1G10180 628 / 0.0 unknown protein Potri.014G195400 [exp] 186 / 7e-49 AT1G10180 215 / 8e-59 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017692 [exp] 926 / 0 AT1G10385 905 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10033648 [exp] 905 / 0 AT1G10385 891 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10035756 [exp] 761 / 0 AT5G49830 1049 / 0.0 exocyst complex component 84B (.1.2.3) Lus10034843 [exp] 760 / 0 AT5G49830 1062 / 0.0 exocyst complex component 84B (.1.2.3) Lus10037332 [exp] 747 / 0 AT5G49830 1052 / 0.0 exocyst complex component 84B (.1.2.3) Lus10033387 [exp] 432 / 4e-141 AT5G49830 588 / 0.0 exocyst complex component 84B (.1.2.3) Lus10040609 [exp] 316 / 3e-96 AT1G10180 854 / 0.0 unknown protein Lus10018297 [exp] 312 / 1e-94 AT1G10180 858 / 0.0 unknown protein Lus10022896 [exp] 197 / 2e-52 AT1G10180 225 / 2e-62 unknown protein Lus10024929 [exp] 155 / 2e-39 AT1G10385 170 / 2e-44 Vps51/Vps67 family (components of vesicular transport) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF08700 [poplar] [flax] Vps51 Vps51/Vps67 CL0295 [poplar] [flax] Vps51 PF16528 [poplar] [flax] Exo84_C Exocyst component 84 C-terminal
Representative CDS sequence Show only first row Show all	>Potri.016G063700.1 pacid=42809835 polypeptide=Potri.016G063700.1.p locus=Potri.016G063700 ID=Potri.016G063700.1.v4.1 annot-version=v4.1 ATGTCGAGAACGTCGAGCATAGGAGACTCAGCGGAGCTGGAAGGAAATCTAACGCTAAGTGATCGCTTAAAGGTCTTCAAGAACTCTCATTTTGATCCCA ATGCCTTTGTCACCTCCAAATGCCAGACTATGAATGAGAAGGAAATAAGGCACCTGTGTTCATACCTCGTGGACCTGAAAAGGGCTTCTGCTGAGGAAAT GAGAAAGAGTGTTTATGCTAACTATGCAGCCTTTATACGGACATCAAGGGAGATTTCAGATCTTGAGGGGCAGCTTATTTCTATGAGAAATTTCCTGTCG ACTCAAGCAGCTCTAGTTCACGGTTTGAGCGAACATGCTCGCATTGATTCTTTGTGGGCTGCTTCTGAAGACTCTATAGCAGATGATTTGTCCAATTTCG ACGATGGGGAGCTTTCTGAGTCAGAAGATTGGTTGATTGAGTTCTTGGACACCTTTGAAGTTCTATTGGCAGAAAGGAGAGTGGACGAAGCTATGCAAGC CCTTGAGAAAGGAGAAGGATTAGCTAACGAATCCACGAAGAAGCACTCTTTGAGCCCAACTGCACTCATTACTTTGGAGACAGCTATTAGAGATCAGCGA CAGAAACTAGCTTATCAGCTTGCAGATACCATTAGCCAACCTTCGACTCGTGGACAAGAGCTTCGTTCAGCTGTTTTAGCTCTAAAAAATCTCGGAGATG CTCCCCGTGCCCATACATTGTTGCTCAATTCTCACCACCAGAAGTTGAAGTCTAGTTTGCCGAGTCTTCGCTCATCCAACAATTCATGTGGACGAGCATA TACTGTTGCACTTTCACAAGTTGTCTTTTCCACCATTGCACAAGCAGCAAGTGATTCTTTGGCAGTTTACGGGGAGGAACCTGCATATACATCTGAACTT GTAACTTGGGCTGTCAAAGAGACTGAGGCTTTTGCTTTTCTTCTAAAGAGGCATGTCCTAGCTTCATCAGCTGCTTCAGGAGGTCTACGGGTTGCTGCTG AGTGCATTCATATATGCTTGGGTCATTGTTCTTTGTTGGAAGCTCGTGGATTGTCCCTTGCTACCGTCTTATTGAGACTTTTTAAGCCTATTATTGAGCA GGCATTGAATGCCAATTTAAAGAAAATTGAAGATATCAGTGCTGCACTTGCTGCTGCAGATGACTGGTTGCTCACTTATCCACCAGCAGGCGGACGTCCT TTCTCTTCAAGTGCATCTCTTGGTAGTGCAATGGCATCACAGCCAAAGCTTTCAAGCAGTGCTAATAGGTTCAATTCCATGATTCAGGACTTTCTTGAGG ATGCGGGACCCCTTGAGAGCCTTCAGCTGGATGGTTCTGCACTGGGAGGCGTTCTTCAAGTGTTCAACTCCTATGTCAATTTGTTAATGCGTGCATTACC GAGTTCAGCAGAGACTGAAGAGAGCTTGGAAGGTTCAGGAAGTAAAATTGTCAGGGTAGCAGAAACTGAATCCCAGCAACTAGCTTTACTAGCTAATGCA TCATTGTTAGCAGATGAACTGCTCCCATATGCTGCCATGAAGCTCTTGCCATTGCCTCCTAGAATAGACGAGCAACCTAAAAGATCTTCAGAAAGGCAAT CCCGTCTTCCGGAACAAAGGGAGTGGAAGAAGAAGCTTCAACGTTCAGTTGATCGCTTGCGAGATAGCTTCTGCAGACAGCATGCTCTTGATCTCATCTT CACAGAAGATGGTGACACTCATCTCAATGCATACATTTACACAAGTCTGGATGACAACGTAGAGGAGCCTGAATGGTTCCCGTCTCTAATTTTCCAGGAA CTTTTCATGAAATTGACCCGGATGGCAAGCATAGCAACCGATATGTTCATAGGCCGGGAAAGATTTGCGACCGTTCTATTAATGAGGCTCACAGAGACAG TGATCCTTTGGCTTTCTGATGATCAAACCTTTTGGGAAGAGATAGAGGAGGGACCAAAACCTCTGGGTCCTCTTGGCCTTCAACAGTTATATTTGGATAT GGAATTTGTGTTGCTCTTCTCGTCTCAAGGACGTTACTTGTCTAGAAATCTACATCAAGTTATTAAGAACATCATAGCAAGAGCGATCGATGCTGTAGCT GCTACTGGAGTAGATCCTTACAGTACGTTGCCGGAGGATGACTGGTTTGCCGAAGTTGCTCAAATAGCTATTAAAATGTTGACTGGGAAAGCAAATTTTG GAAATGTGGAACGAGATGTTACTAGCCCTACTGCTTCTGTGTCGGCAAAATCTGTATCTTCAATCGTATCTCATGGGAGTAACGAATTCAGCCATTGA
AA sequence Show only first row Show all	>Potri.016G063700.1 pacid=42809835 polypeptide=Potri.016G063700.1.p locus=Potri.016G063700 ID=Potri.016G063700.1.v4.1 annot-version=v4.1 MSRTSSIGDSAELEGNLTLSDRLKVFKNSHFDPNAFVTSKCQTMNEKEIRHLCSYLVDLKRASAEEMRKSVYANYAAFIRTSREISDLEGQLISMRNFLS TQAALVHGLSEHARIDSLWAASEDSIADDLSNFDDGELSESEDWLIEFLDTFEVLLAERRVDEAMQALEKGEGLANESTKKHSLSPTALITLETAIRDQR QKLAYQLADTISQPSTRGQELRSAVLALKNLGDAPRAHTLLLNSHHQKLKSSLPSLRSSNNSCGRAYTVALSQVVFSTIAQAASDSLAVYGEEPAYTSEL VTWAVKETEAFAFLLKRHVLASSAASGGLRVAAECIHICLGHCSLLEARGLSLATVLLRLFKPIIEQALNANLKKIEDISAALAAADDWLLTYPPAGGRP FSSSASLGSAMASQPKLSSSANRFNSMIQDFLEDAGPLESLQLDGSALGGVLQVFNSYVNLLMRALPSSAETEESLEGSGSKIVRVAETESQQLALLANA SLLADELLPYAAMKLLPLPPRIDEQPKRSSERQSRLPEQREWKKKLQRSVDRLRDSFCRQHALDLIFTEDGDTHLNAYIYTSLDDNVEEPEWFPSLIFQE LFMKLTRMASIATDMFIGRERFATVLLMRLTETVILWLSDDQTFWEEIEEGPKPLGPLGLQQLYLDMEFVLLFSSQGRYLSRNLHQVIKNIIARAIDAVA ATGVDPYSTLPEDDWFAEVAQIAIKMLTGKANFGNVERDVTSPTASVSAKSVSSIVSHGSNEFSH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10385			Vps51/Vps67 family (components...		Potri.016G063700 [exp]	0	1
AT5G46330		FLS2	FLAGELLIN-SENSITIVE 2, Leucine...		Potri.011G068500 [exp]	15.55	0.7858
AT1G54530			Calcium-binding EF hand family...		Potri.005G049900 [exp]	32.71	0.7550
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Potri.002G214200 [exp]	60.28	0.7332
AT3G49800			BSD domain-containing protein ...		Potri.014G008400 [exp]	64.06	0.7327
AT4G25190		QWRF7	QWRF domain containing 7, Fami...		Potri.001G126000 [exp]	66.38	0.7005
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Potri.005G093800 [exp]	76.21	0.7333
AT1G08110			lactoylglutathione lyase famil...		Potri.004G214966 [exp]	158.70	0.7051
AT3G22750			Protein kinase superfamily pro...		Potri.008G156000 [exp]	187.18	0.6696
AT5G51400			PLAC8 family protein (.1)		Potri.003G108800 [exp]	190.85	0.6689
AT2G17080			Arabidopsis protein of unknown...		Potri.005G249100 [exp]	207.87	0.6586

Compare expression of checked genes

Potri.016G063700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.