Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38110 533 / 0 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT4G00400 517 / 0 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT1G01610 511 / 1e-178 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT3G11430 503 / 2e-175 ATGPAT5, GPAT5 glycerol-3-phosphate acyltransferase 5 (.1) AT5G06090 493 / 1e-171 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT1G06520 416 / 4e-140 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1) AT1G02390 335 / 1e-109 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1) AT4G01950 331 / 7e-108 ATGPAT3, GPAT3 glycerol-3-phosphate acyltransferase 3 (.1) AT3G11325 306 / 6e-100 Phospholipid/glycerol acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G198100 [exp] 947 / 0 AT2G38110 527 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G113100 [exp] 600 / 0 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G097800 [exp] 596 / 0 AT2G38110 809 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.014G085500 [exp] 514 / 4e-180 AT4G00400 757 / 0.0 glycerol-3-phosphate acyltransferase 8 (.1) Potri.010G201200 [exp] 501 / 6e-175 AT3G11430 720 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Potri.008G058200 [exp] 491 / 6e-171 AT5G06090 704 / 0.0 glycerol-3-phosphate acyltransferase 7 (.1) Potri.005G202200 [exp] 472 / 1e-162 AT1G06520 650 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Potri.002G192600 [exp] 369 / 2e-122 AT4G01950 601 / 0.0 glycerol-3-phosphate acyltransferase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036684 [exp] 791 / 0 AT2G38110 558 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10010741 [exp] 782 / 0 AT2G38110 555 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10002500 [exp] 559 / 0 AT2G38110 683 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10004711 [exp] 493 / 1e-171 AT3G11430 743 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Lus10017794 [exp] 444 / 4e-153 AT3G11430 392 / 5e-133 glycerol-3-phosphate acyltransferase 5 (.1) Lus10018832 [exp] 441 / 7e-152 AT3G11430 390 / 3e-132 glycerol-3-phosphate acyltransferase 5 (.1) Lus10010934 [exp] 433 / 4e-147 AT1G06520 605 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10004833 [exp] 427 / 2e-146 AT2G38110 512 / 3e-180 glycerol-3-phosphate acyltransferase 6 (.1) Lus10020767 [exp] 423 / 5e-144 AT1G06520 569 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10031396 [exp] 417 / 1e-140 AT1G06520 595 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [poplar] [flax] Acyltransferase PF01553 [poplar] [flax] Acyltransferase Acyltransferase CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.016G063900.1 pacid=42809241 polypeptide=Potri.016G063900.1.p locus=Potri.016G063900 ID=Potri.016G063900.1.v4.1 annot-version=v4.1 ATGGATAGCTTTCCAACTGTTGACAAATGTGCATCCATAGGTAGAGAAAAGCACACTGTGGTAGCTGACATGGATGGAACCCTGCTTAGAGGTCGTAGCT CATTCCCTTACTTTGCTCTACTTGCCTTTGAAGCTGGTGGGATTTTTAGGCTGATTTTCTTGCTATTGGCCTCACCGCTAGCAGGACTTCTATACTACTT TGTGTCCGAGTCTGCTGGTATTAAGGTTCTTATATTTGCTACATGTGCCGGAATGAAGGTTTCCGATATTGAGTCTGTGGCTCGTGCTGTACTGCCTAAG TTTTACTCTAGCGATCTTCATTCTGAGTCGTGGCGTGTGTTTTCTTCTTGTGGAAAACGATGTGTTCTTACTGCAAATCCAAGAATTATGGTGGAAGCAT TTTTGAAAGATTTCTTGGGAGCTGATTTGGTTTTGGGGACAGAGATGTCTACTTATAAAGGCAGAGCAACAGGGTTTGTTCTTAGCCCAGGAGTACTTGT GGGGAAGAACAAGGCAGATGCCCTCAAAAAGGCTTTTGGAGAGGCACAGCCAGAGATTGGACTTGGAGATCGTCATACAGATGCACCCTTCATGGCTTTA TGCAAGGATGGCTACATAGTGCCACCCAAGCCAGACGTTAAAGCAGTGACAACGGACAAGCTCCCAAAACCAATCATCTTCCATGATGGCCGGCTAGTCC AAAAACCAACACCATTATCAGCACTACTCACAATTCTCTGGATCCCAATAGGCTTCATTTTAGCCTGCTTGAGAATTGCAGCCGGGTCACTCCTGCCTAT GCCAATGGTCTACTATGCTTTCTGGGCACTTGGTGTCCGTGTCATCATAAAGGGAACCCCACCTCCCCCGGCCAAGAAATCAATCGGTCAATCTGGTGTC CTCTTTATTTGCTCTCACCGAACCTTGCTTGATCCAATATTTCTCTCCACTGCCCTCGGCCGTCCTATCCCAGCAGTCACGTACTCAGTTTCTCGTCTCT CTGAAATTATCTCACCCATCAAAACTGTTAGACTCAGCCGTGACCGTGCTACAGACGCATCCATGATCAAGAAGTTGTTAGAAGAAGGTGACCTAGCTAT ATGCCCTGAGGGAACTACTTGCCGCGAACCCTTTCTTTTAAGGTTCTCAGCTTTGTTTGCTGAATTAACAGACCAACTTGTTCCAGTGGCTGTGGTGAAT CGCATGAGTATGTTTCATGGGACAACAGCAAGAGGGTGGAAAGGGATGGATCCGTTTTACTTCTTCATGAACCCTAGCCCAGCATATGAAGTAACTTTCT TGAACAGGTTACCACAGGAGCTAACCTGCACTGGTGGGAAATCTAGTCATGAGGTGGCAAACTACATACAAAGAGTGATTGCTGCCACCCTGTCCTATGA ATGCACTTCCTTTACTAGGAGAGATAAGTACAGGGCACTTGCTGGGAACGATGGTACTGTGGTTGAAAAAACGAAGCTCCAAGCCAACAAAGTAATGGGG TGTTGA
AA sequence Show only first row Show all	>Potri.016G063900.1 pacid=42809241 polypeptide=Potri.016G063900.1.p locus=Potri.016G063900 ID=Potri.016G063900.1.v4.1 annot-version=v4.1 MDSFPTVDKCASIGREKHTVVADMDGTLLRGRSSFPYFALLAFEAGGIFRLIFLLLASPLAGLLYYFVSESAGIKVLIFATCAGMKVSDIESVARAVLPK FYSSDLHSESWRVFSSCGKRCVLTANPRIMVEAFLKDFLGADLVLGTEMSTYKGRATGFVLSPGVLVGKNKADALKKAFGEAQPEIGLGDRHTDAPFMAL CKDGYIVPPKPDVKAVTTDKLPKPIIFHDGRLVQKPTPLSALLTILWIPIGFILACLRIAAGSLLPMPMVYYAFWALGVRVIIKGTPPPPAKKSIGQSGV LFICSHRTLLDPIFLSTALGRPIPAVTYSVSRLSEIISPIKTVRLSRDRATDASMIKKLLEEGDLAICPEGTTCREPFLLRFSALFAELTDQLVPVAVVN RMSMFHGTTARGWKGMDPFYFFMNPSPAYEVTFLNRLPQELTCTGGKSSHEVANYIQRVIAATLSYECTSFTRRDKYRALAGNDGTVVEKTKLQANKVMG C

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Potri.016G063900 [exp]	0	1
AT5G24090		ATCHIA	chitinase A (.1)		Potri.002G242000 [exp]	1.00	0.9808	Pt-CHI3.10
AT4G35780		STY17	serine/threonine/tyrosine kina...		Potri.006G222600 [exp]	14.56	0.9733
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.005G106000 [exp]	16.91	0.9280	PtrAMT4-5
					Potri.006G008900 [exp]	19.82	0.9327
					Potri.005G224300 [exp]	22.44	0.9645
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Potri.006G198100 [exp]	25.92	0.9636
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.001G113700 [exp]	27.11	0.9621
AT1G52190			Major facilitator superfamily ...		Potri.012G087500 [exp]	28.00	0.9120
AT5G39160			RmlC-like cupins superfamily p...		Potri.001G465100 [exp]	29.49	0.9589	GER2.31
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.012G093900 [exp]	29.64	0.8392

Compare expression of checked genes

Potri.016G063900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.