Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-UBP12.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06600 1943 / 0 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT3G11910 1919 / 0 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT3G58250 141 / 1e-36 TRAF-like family protein (.1) AT3G58270 137 / 6e-35 Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.1), Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.2) AT3G58360 125 / 1e-31 TRAF-like family protein (.1) AT3G58340 125 / 5e-31 TRAF-like family protein (.1) AT3G58210 123 / 2e-30 TRAF-like family protein (.1) AT3G58350 111 / 1e-26 RTM3 RESTRICTED TEV MOVEMENT 3 (.1) AT3G27040 112 / 3e-26 Meprin and TRAF (MATH) homology domain-containing protein (.1) AT3G58410 111 / 3e-26 TRAF-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G198300 [exp] 2152 / 0 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.008G012600 [exp] 1971 / 0 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.010G245100 [exp] 1970 / 0 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.010G075000 [exp] 114 / 3e-25 AT1G04300 855 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.001G130700 [exp] 107 / 8e-25 AT3G17380 244 / 2e-79 TRAF-like family protein (.1) Potri.003G103200 [exp] 106 / 8e-25 AT3G17380 251 / 2e-82 TRAF-like family protein (.1) Potri.008G163300 [exp] 112 / 9e-25 AT1G04300 846 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.005G179500 [exp] 110 / 3e-24 AT3G49600 1245 / 0.0 ubiquitin-specific protease 26 (.1) Potri.002G081600 [exp] 107 / 3e-23 AT3G49600 1251 / 0.0 ubiquitin-specific protease 26 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029309 [exp] 1955 / 0 AT5G06600 1957 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10043456 [exp] 1902 / 0 AT5G06600 1925 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10008949 [exp] 1894 / 0 AT5G06600 1904 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034130 [exp] 1856 / 0 AT3G11910 1888 / 0.0 ubiquitin-specific protease 13 (.1.2) Lus10028871 [exp] 871 / 0 AT5G06600 1351 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034129 [exp] 172 / 3e-48 AT5G06600 164 / 2e-46 ubiquitin-specific protease 12 (.1.2.3) Lus10025569 [exp] 152 / 2e-39 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10019772 [exp] 149 / 3e-36 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10027030 [exp] 127 / 8e-32 AT5G06600 120 / 8e-30 ubiquitin-specific protease 12 (.1.2.3) Lus10013378 [exp] 132 / 7e-31 AT3G43590 256 / 1e-74 zinc knuckle (CCHC-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF00443 [poplar] [flax] UCH Ubiquitin carboxyl-terminal hydrolase CL0072 [poplar] [flax] Ubiquitin PF12436 [poplar] [flax] USP7_ICP0_bdg ICP0-binding domain of Ubiquitin-specific protease 7 CL0072 [poplar] [flax] Ubiquitin PF14533 [poplar] [flax] USP7_C2 Ubiquitin-specific protease C-terminal
Representative CDS sequence Show only first row Show all	>Potri.016G064100.3 pacid=42809318 polypeptide=Potri.016G064100.3.p locus=Potri.016G064100 ID=Potri.016G064100.3.v4.1 annot-version=v4.1 ATGACTATGATGACTCCTTCACCGTTAGACCAAGAAGACGAGGAGATGCTCGTACCGCATTCAGATTTAGTTGAAGGTCCTCAGCCAATGGAAGTAGTGG CACAAGTGGAGCAAACTAGTACCGTGGAGAATCAGCCTGTGGAGGATCCTCCATCGATGAAATTTACTTGGACTATTGAGAATTTTACTAGGTTGAACAC GAAGAAGCATTATTCTGATATATTTATTGTTGGCAGTTACAAATGGAGAGTACTGATATTCCCTAAAGGAAACAACGTGGACCACCTGTCGATGTATTTG GATGTTGCAGATTCGACAGCTTTGCCATATGGATGGAGTAGATATGCGCAATTCAGTTTGGCTGTGGTCAATCAAATTCATAACAAATACTCGATTAGAA AGGACACACAACATCAGTTCAATGCAAGAGAGAGTGACTGGGGCTTTACATCTTTCATGCCTCTGAGTGAACTTTATGATCCTAGCAGAGGATACTTAGT GAATGATACAGTTGTTATTGAAGCTGAAGTTGCTGTTTGCAAGGTTTTAGATTATTGGTCCTATGACTCAAAGAAGGAGACGGGCTATGTAGGACTGAAA AACCAAGGAGCAACATGTTACATGAACTCTCTCCTACAGACTCTATACCATATTTCCTACTTCCGAAAGGCGGTGTACCACATGCCAACAACTGAGAATG ACATGCCTACAGGAAGCATTCCATTGGCCCTGCAGAGTTTATTCTTTAAGCTTCAATATAATGATACCAGTGTTGCAACAAAGGAACTGACCAAATCTTT TGGCTGGGATACGTATGATTCCTTCATGCAACATGACGTGCAAGAGCTTAACAGGGTCCTGTGTGAGAAGCTAGAGGATAAAATGAAGGGGACTGTTGTG GAGGGCACTATACAGCAGTTGTTTGAGGGTCACCATATGAACTACATTGAGTGCATCAATGTGGAATACAAATCTACAAGAAAGGAGTCATTTTATGATC TTCAGCTTGATGTGAAAGGTTGTCGAGATGTTTATGCTTCTTTTGACAAATATGTGGAAGTTGAACGACTTGAGGGTGATAACAAATATCATGCCGAAGA ACATGGTTTGCAGGATGCAAAGAAGGGTGTCTTATTTATCGACTTCCCCCCTGTTCTTCAACTCCAATTAAAGCGGTTTGAATATGATTTTATGCGCGAT ACTATGGTGAAGATTAATGATCGCTATGAATTTCCTCTTCAACTTGACCTGGACAGGGAGAATGGGAAATATTTATCACCTGAATCTGACAGGAGTGTGC GAAATCTATACACACTTCACAGTGTTTTGGTTCACAGTGGAGGTGTGCATGGTGGACATTATTATGCTTTTATCAGGCCTACCCTCTCTGATCAATGGTT CAAATTTGATGATGAACGCGTGACAAAGGAAGATGTGAAGAGGGCCTTAGAAGAACAGTATGGTGGTGAGGAAGAGCTACCTCAGACCAATCCTGGCTTT AACAATACTCCATTTAAATTCACAAAATACTCAAATGCATACATGCTTGTGTATATACGGGAAAGTGACAAGGACAAGATAATTTGTAATGTTGATGAGA AAGACATTGCTGAACACTTGAGGATAAGGCTGAAGAAAGAACAAGAAGAAAAGGAAGACAAGAGAAGATATAAAGCACAAGCTCACCTTTACACAATTAT AAAGGTTGCGCGAGATGAGGACCTTAAAGAGCAAATTGGAAAGGATATTTATTTTGACCTTGTGGATCATGACAAAGTCCGTAACTTCCGTATTCAGAAA CAGACGCAGTTTAGTCTGTTTAAGGAGGAGGTTGCTAAAGAGCTTGGTATACCAGTACAATTTCAGAGATTTTGGATATGGGCAAAGCGCCAAAACCACA CATATAGACCCAATCGGCCATTGACTCCCCAGGAGGAAGCACAATCAGTTGGACAACTGAGAGAGGTGTCAAATAAGACACATAATGCTGAATTAAAGTT GTTCTTGGAAGTTGAGCTTGGGCTGGATTTACGTCCCATTGCTCCACCTGAAAAAACTAAAGAAGATATTCTGCTTTTCATCAAGCTTTATGACCCTGAA AAACAAGAATTACGATATGTTGGTAGGCTTTTTGTGAAGAATTCTAGTAAACCGATAGAAATTCTAGCAAAGCTTAATCAAATGGCTGGCTTTGCGTCTG AGGAAGAGATTGAACTTTATGAGGAAATCAAGTTTGAGCCTTGTGTCATGTGTGAACACCTTGATAAGAGAGCCTCATTTCGAACAAGTCAGATTGAAGA TGGGGACATAATATGCTTTCAGAAATCTCCTCCTGAAAATGAAGGAGACTGTCGAAATCCAGATGTGCCTTCATATTTGGAATATGTGCACAATCGGCAG ATAGTTCATTTCCGATCTCTAGAGAAGGCAAAAGAGGATGATTTTTGTCTAGAGTTGTCAAAATTACACACTTATGATGATGTTGTCGAAAGAGTAGCTC GCCAGATTGGTTTGGACGATCCATCCAAAATCAGGTTAACATCCCACAACTGCTACTCTCAGCAGCCTAAGCCACAGCCAATTAAATATCGAGGAGTGGA GCATCTATCAGATATGTTAGTTCACTACAATCAGACTTCCGATATCTTGTATTATGAAGTTCTAGATATTCCTCTTCCAGAGTTGCAAGGTCTAAAAAAT TTGAAAGTTGCTTTCCATCACGCTACCAAAGATGAAGTGGTAATTCATAACATTAGATTGCCTAAACAAAGCACCGTGGGGGATGTAATTAATGAACTTA AAACTAAGGTAGAATTGTCTCACCCAAATGCTGAACTTCGACTGCTTGAAGTATTTTATCACAAGATTTATAAGATCTTTCCACCCAATGAAAAAATTGA GAATATAAATGACCAGTATTGGACGCTGCGGGCAGAGGAGATTCCCGAGGAAGAAAAAAATCTTGGTCCCCAAGATCGCCTGATTCACGTTTATCACTTC ACGAAAGAGTCTGGACAGAATCAAATGCAAGTACAGAATTTTGGTGAACCCTTTTTCTTGGCCATCCATGAAGGTGAAACCTTAGCCGAAGTTAAAATGC GTATACAAAAGAAGCTGCAGGTTCCTGATGAGGAGTTTGCTAAGTGGAAATTTGCATTTCTGTCACTGGGTCGTCCAGAGTACTTGCAGGATTCTGATGT TGTGTTCACCCGCTTTCAGAGAAGAGATGTATATGGTGCTTGGGAGCAGTACCTTGGGTTGGAGCACTCCGATAATACTCCTAAAAGGTCTTATGCAGTA AATCAGAACCGTCACACATTTGAGAAGCCTGTTAAAATATACAATTAG
AA sequence Show only first row Show all	>Potri.016G064100.3 pacid=42809318 polypeptide=Potri.016G064100.3.p locus=Potri.016G064100 ID=Potri.016G064100.3.v4.1 annot-version=v4.1 MTMMTPSPLDQEDEEMLVPHSDLVEGPQPMEVVAQVEQTSTVENQPVEDPPSMKFTWTIENFTRLNTKKHYSDIFIVGSYKWRVLIFPKGNNVDHLSMYL DVADSTALPYGWSRYAQFSLAVVNQIHNKYSIRKDTQHQFNARESDWGFTSFMPLSELYDPSRGYLVNDTVVIEAEVAVCKVLDYWSYDSKKETGYVGLK NQGATCYMNSLLQTLYHISYFRKAVYHMPTTENDMPTGSIPLALQSLFFKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVV EGTIQQLFEGHHMNYIECINVEYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRD TMVKINDRYEFPLQLDLDRENGKYLSPESDRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWFKFDDERVTKEDVKRALEEQYGGEEELPQTNPGF NNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRIRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLKEQIGKDIYFDLVDHDKVRNFRIQK QTQFSLFKEEVAKELGIPVQFQRFWIWAKRQNHTYRPNRPLTPQEEAQSVGQLREVSNKTHNAELKLFLEVELGLDLRPIAPPEKTKEDILLFIKLYDPE KQELRYVGRLFVKNSSKPIEILAKLNQMAGFASEEEIELYEEIKFEPCVMCEHLDKRASFRTSQIEDGDIICFQKSPPENEGDCRNPDVPSYLEYVHNRQ IVHFRSLEKAKEDDFCLELSKLHTYDDVVERVARQIGLDDPSKIRLTSHNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKN LKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIYKIFPPNEKIENINDQYWTLRAEEIPEEEKNLGPQDRLIHVYHF TKESGQNQMQVQNFGEPFFLAIHEGETLAEVKMRIQKKLQVPDEEFAKWKFAFLSLGRPEYLQDSDVVFTRFQRRDVYGAWEQYLGLEHSDNTPKRSYAV NQNRHTFEKPVKIYN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.016G064100 [exp]	0	1	Pt-UBP12.1
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Potri.010G019150 [exp]	3.16	0.8389
AT2G47410			WD40/YVTN repeat-like-containi...		Potri.014G121100 [exp]	4.24	0.8270
AT3G14470			NB-ARC domain-containing disea...		Potri.004G194800 [exp]	5.29	0.7962	RGA.63
AT2G19390			unknown protein		Potri.018G056400 [exp]	6.00	0.7992
AT3G04160			unknown protein		Potri.019G029400 [exp]	6.48	0.8239
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.019G054600 [exp]	11.13	0.8200
AT5G24740			Protein of unknown function (D...		Potri.001G455600 [exp]	11.40	0.8035
AT3G22430			unknown protein		Potri.010G235700 [exp]	11.95	0.7738
AT1G28420	HD	HB-1	homeobox-1 (.1)		Potri.004G048675 [exp]	12.32	0.7876
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Potri.002G079100 [exp]	14.38	0.7436

Compare expression of checked genes

Potri.016G064100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.