Plant FIBer expression Database

Potri.016G064200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G06590 299 / 6e-101 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021091
[exp]
241 / 2e-78 AT5G06590 198 / 7e-62 unknown protein
PFAM info
Representative CDS sequence
>Potri.016G064200.1 pacid=42809258 polypeptide=Potri.016G064200.1.p locus=Potri.016G064200 ID=Potri.016G064200.1.v4.1 annot-version=v4.1
ATGGAAGAAACGATATCTGAATTTAGCAAAAGCGTAGGCAGCTTCTGCAACCACCTCCAGTCTAGCTGCGACGCTCTCAAACAATCCATCGACCGCCGCC
CCATCCCTCTCGATTCGGCTTCATCTACATATATCCAGTGCTTAAACAGAAGTGTAGCGAGCGCAAGCAGCGATCTCAACTTACTAGAATCGATGTCATT
TGGTACCGTTTCTTTTGAGGAATTATTAGGTCATTGCAATGAAGTTTACAAGAACAGTGAGAATCGTATTCTTGATATTCAAGATCGTCTCAGGAGCTTC
GGTTATGTTCCTGCTGAAGTTGAGATTGATGATGAAGCGGATTTGAGTGTATCGATGGCGCTAGGTTTAAACTTGAAGGATGAAATGGACCCTTCTGCAG
CTTATAATGAACCGGTGTCTGTGGCAAGTTCAATCATGAAGAGTTTGGAAGAGGATCCTTTAATGGACGAGACGTTGAGCTTAAAGAGTCTAGGGCTTTC
AGATGTCTGTCTTGCCACTTTAGCAGCTGAAGCTAACAGTAAGATAAATGACCCCGATATATCTATGAGAGACACAAAGAAGTATTATGGTGACAAATTA
CACAACGAGAAGAGTCTGGACCAAAATACTGCAAATATGGGAGTAATTGAAGGTGAACTGGAACCAGCTGAAGCTCTTAGGGCTGTTGTGAAGGCTTCAA
AGGATGATTATGAAAGTCTTCCTTCCTACATGAAAAGTCTAACATCATGGGAGGATCTGCTTACTGCCGTTGAGAAAATTAACTCCAGCCTGAAGAAGAA
GGATAAAACAAAGGGAAATAATTATTTCCGCCAAAATGAAATCACATCAATGGATTTAGGGCCTAAAGCAAGAACTTATTTGCTGCTGCTCACACGCATG
AATCAGCTGGCTGTTGAAACTGTTGATGGTTTGATATCCTATAAAGTTCTATAG
AA sequence
>Potri.016G064200.1 pacid=42809258 polypeptide=Potri.016G064200.1.p locus=Potri.016G064200 ID=Potri.016G064200.1.v4.1 annot-version=v4.1
MEETISEFSKSVGSFCNHLQSSCDALKQSIDRRPIPLDSASSTYIQCLNRSVASASSDLNLLESMSFGTVSFEELLGHCNEVYKNSENRILDIQDRLRSF
GYVPAEVEIDDEADLSVSMALGLNLKDEMDPSAAYNEPVSVASSIMKSLEEDPLMDETLSLKSLGLSDVCLATLAAEANSKINDPDISMRDTKKYYGDKL
HNEKSLDQNTANMGVIEGELEPAEALRAVVKASKDDYESLPSYMKSLTSWEDLLTAVEKINSSLKKKDKTKGNNYFRQNEITSMDLGPKARTYLLLLTRM
NQLAVETVDGLISYKVL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G06590 unknown protein Potri.016G064200
[exp]
0 1
AT2G32590 EMB2795 EMBRYO DEFECTIVE 2795, unknown... Potri.014G155900
[exp]
3.87 0.9585
AT5G05240 Uncharacterised conserved prot... Potri.019G058200
[exp]
4.00 0.9449
AT3G02920 ATRPA32B Replication protein A, subunit... Potri.006G167600
[exp]
7.07 0.9176
AT5G65120 unknown protein Potri.007G090500
[exp]
8.06 0.9413
AT5G67270 ATEB1C, ATEB1H1 ATEB1-HOMOLOG1, MICROTUBULE EN... Potri.005G142200
[exp]
9.16 0.9438
AT2G38620 CDKB1;2 cyclin-dependent kinase B1;2 (... Potri.006G113200
[exp]
9.48 0.9302
AT1G54385 ARM repeat superfamily protein... Potri.019G033900
[exp]
13.49 0.9255
AT4G02060 MCM7, PRL PROLIFERA, Minichromosome main... Potri.014G121000
[exp]
13.56 0.9202 PRL.2
AT5G45700 Haloacid dehalogenase-like hyd... Potri.004G062900
[exp]
13.63 0.9400
AT1G10780 F-box/RNI-like superfamily pro... Potri.003G019400
[exp]
14.49 0.8820

Potri.016G064200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.