Plant FIBer expression Database

Potri.016G064300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G54720 804 / 0 MFO1, HPT, COP2, AMP1 PRIMORDIA TIMING, Multifolia, HAUPTLING, CONSTITUTIVE MORPHOGENESIS 2, ALTERED MERISTEM PROGRAM 1, Peptidase M28 family protein (.1)
AT5G19740 553 / 0 Peptidase M28 family protein (.1)
AT4G07670 191 / 2e-55 protease-associated (PA) domain-containing protein (.1), protease-associated (PA) domain-containing protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G153300
[exp]
582 / 0 AT5G19740 877 / 0.0 Peptidase M28 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021090
[exp]
706 / 0 AT3G54720 628 / 0.0 PRIMORDIA TIMING, Multifolia, HAUPTLING, CONSTITUTIVE MORPHOGENESIS 2, ALTERED MERISTEM PROGRAM 1, Peptidase M28 family protein (.1)
Lus10017223
[exp]
685 / 0 AT3G54720 630 / 0.0 PRIMORDIA TIMING, Multifolia, HAUPTLING, CONSTITUTIVE MORPHOGENESIS 2, ALTERED MERISTEM PROGRAM 1, Peptidase M28 family protein (.1)
Lus10011133
[exp]
504 / 9e-171 AT5G19740 806 / 0.0 Peptidase M28 family protein (.1)
Lus10043036
[exp]
470 / 1e-157 AT5G19740 745 / 0.0 Peptidase M28 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0364 Leu-IlvD PF02225 PA PA domain
CL0035 Peptidase_MH PF04389 Peptidase_M28 Peptidase family M28
Representative CDS sequence
>Potri.016G064300.2 pacid=42809752 polypeptide=Potri.016G064300.2.p locus=Potri.016G064300 ID=Potri.016G064300.2.v4.1 annot-version=v4.1
ATGTCTCCACCGCTCACAAAACCAACAACAACAAGCTCGATCTTTTTCCCATCAAAACCGCCACCGCCACTCTGCACTTTCCTTCTCTTGACAGTCCTTT
GCTTTATTGGTTTCTTTTACACTCTCCACCACTCTCAAAATCCCAAGACTACCCTCCAGCACACCGCCACCCTCTTCCTCTCTTACTCCTCTAACTCCAC
CATCTCCTCCTACCTTCACTCCCTCACTCTCCACCCTCACCTCGCTGGCACCAAACCTTCTCTTGACACCGTCAACTATGTCTTCTCCCATTTCAAGAAC
CTCAAGTTAGAAACACACAAGAAAGAATACCAAGTTTTGCTCTCTTACCCTATAAAATCTTCACTCTCCGCGCATTTTAGCAACGGGAGTGTTGTAGATT
TTAATATGAGTGAGTTTCTTGATCTTGCTGAATCAGATAAAATCGTTTCCCCGTACCATGCGTATTCGCCGTCTGGTACGGTGCACGCTAAGGTTGTCTT
TGTGAATTATGGCCGTGAAGTGGACTATAATGCGCTTGGGGCTTTAGGGGTGAACGTTAGTGGATGTGTTGTTTTGGTAAGGAAAGGTGAGGGTTTAAGT
AGGGGTGGAGTGGTTAAAATAGCTGAATCTAAAGGTGCTTTGGCTGTTCTGTTGTACGCCGAGGACGGTAGGGTAAGTGGGGGTGTGGAGAGAGGGACTG
TGATGAGGGGTGTAGGAGACCCACTTAGTCCGGGGTGGGCTGGGGTTGAAGGAGGGGAGAGACTGGGGTTAGAGGACAGTGAAGTACTTGAGAGGTTTCC
TAAAATTCCATCTCTGCCCTTGTCTTTTGGGAATGCTGACGTCATCTTGGGGTCGCTTGGTGGCCGTACCGTGCCTCCGGAGTGGAGGGATTCTGGTGGA
AGGTCTAGGGTCTTACGGACCGGCCCAGGGCCGGCTAAGGTCAACTTCACTTACCAGGGGGAGAAAAAGGTGGTGACAATCCACAATGTTTTTGCTGTCA
TAAGGGGGTCAGAAGAGCCTGATCGTTATGTGATCCTTGGTAATCACAGAGATGCATGGACATATGGAGCTGTTGATCCCAATAGTGGTACTGCTGCATT
ACTAGACATTGCTCGGCGATATGCTCGTTTGATGCAGAAGGGGTGGAACCCTCGAAGAACTATAATCCTTGGTAGTTGGGATGCAGAAGAGTTCGGGATG
GTAGGGTCTACCGAGTGGGTTGAACAAAACCTTGTCAATTTGGGTGCGAAAGCAGTGGCGTATCTTAATGTAGATTGTGCAGTTCAAGGCCCAGGATTTT
TTGCCAGTGCAACTCCCCAGCTAGATAATCTTCTTATTGAGGTTACAAAAAAGGTCAAGGATCCTGAAGCAGAGGGTGCAACTGTATATGAGAAATGGGC
AGCCAGAAACCAAGTCAATGCAATTCAAAGACTTGGTGGAGTGGATTCTGATTTTGCTCCATTTCTGCAACATGCAGGGATTCCTTCTATTGATATCTAT
TATGGAAGAGATTTCCCTGTCTATCACACTGCTTTTGACTCCTATGGGTGGATGAAAAAATATGCAGACCCGTTATTTCATCGTCATGTGGCTGTTGCTG
GAATTTGGGGACTTCTAGCCCTTCACCTGGCTGATGAGTCTATTCTCCCATTTGATTACATCTCTTACGTGGAGCAGTTACAGGGGCATACAGGTGTCTT
GGGCAAACTATTGGACAGGAACGTATCTCTTCATCCTTTAGTTACTTCAATTCAAGAACTTGCCTCTGCTGCCAAAGAAGTGGAGTATGAAGTAAAGCAA
TTGAGAGAACAAGAGAGGAGGGGGGATTTTATAGATCTGAAGTTGCGAGCATTGAATGATCGGCTGATGCTTGCTGAAAGAGGCTTCCTGGATGTAGAAG
GGCTTCAAGGAAGGCAATGGTTTAAGCATCTTATTTATGGGCCTCCGAGTAACTATGAAAGCAAACTGGATTTCTTCCCTGGAATAGCAGATGCTCTCTC
TCAATCCACCAGCAAAAGCCAACAAAATAGACAAGCAGCAGTTCAGCATGAGATATGGAGAGTTGGCAGAGCCATTGAAAGGGCTGCTAGTGCTCTTAAA
GGGAATCTCACCTGA
AA sequence
>Potri.016G064300.2 pacid=42809752 polypeptide=Potri.016G064300.2.p locus=Potri.016G064300 ID=Potri.016G064300.2.v4.1 annot-version=v4.1
MSPPLTKPTTTSSIFFPSKPPPPLCTFLLLTVLCFIGFFYTLHHSQNPKTTLQHTATLFLSYSSNSTISSYLHSLTLHPHLAGTKPSLDTVNYVFSHFKN
LKLETHKKEYQVLLSYPIKSSLSAHFSNGSVVDFNMSEFLDLAESDKIVSPYHAYSPSGTVHAKVVFVNYGREVDYNALGALGVNVSGCVVLVRKGEGLS
RGGVVKIAESKGALAVLLYAEDGRVSGGVERGTVMRGVGDPLSPGWAGVEGGERLGLEDSEVLERFPKIPSLPLSFGNADVILGSLGGRTVPPEWRDSGG
RSRVLRTGPGPAKVNFTYQGEKKVVTIHNVFAVIRGSEEPDRYVILGNHRDAWTYGAVDPNSGTAALLDIARRYARLMQKGWNPRRTIILGSWDAEEFGM
VGSTEWVEQNLVNLGAKAVAYLNVDCAVQGPGFFASATPQLDNLLIEVTKKVKDPEAEGATVYEKWAARNQVNAIQRLGGVDSDFAPFLQHAGIPSIDIY
YGRDFPVYHTAFDSYGWMKKYADPLFHRHVAVAGIWGLLALHLADESILPFDYISYVEQLQGHTGVLGKLLDRNVSLHPLVTSIQELASAAKEVEYEVKQ
LREQERRGDFIDLKLRALNDRLMLAERGFLDVEGLQGRQWFKHLIYGPPSNYESKLDFFPGIADALSQSTSKSQQNRQAAVQHEIWRVGRAIERAASALK
GNLT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G54720 MFO1, HPT, COP2... PRIMORDIA TIMING, Multifolia, ... Potri.016G064300
[exp]
0 1
AT3G46920 Protein kinase superfamily pro... Potri.006G190200
[exp]
4.35 0.7849
Potri.008G005850
[exp]
11.09 0.7364
AT2G23520 Pyridoxal phosphate (PLP)-depe... Potri.007G036100
[exp]
11.22 0.6749
AT1G33270 Acyl transferase/acyl hydrolas... Potri.003G020800
[exp]
13.41 0.6846
Potri.010G080501
[exp]
16.49 0.7027
Potri.001G439825
[exp]
21.16 0.7345
AT3G22590 PHP, CDC73 PLANT HOMOLOGOUS TO PARAFIBROM... Potri.010G085500
[exp]
21.54 0.7373 PAFE901
AT5G13210 Uncharacterised conserved prot... Potri.003G165200
[exp]
30.51 0.7267
AT3G23000 PKS7, ATSRPK1, ... SNF1-RELATED PROTEIN KINASE 3.... Potri.008G160200
[exp]
31.60 0.6869 CIPK4.1
AT5G65290 LMBR1-like membrane protein (.... Potri.005G072100
[exp]
33.40 0.6774

Potri.016G064300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.