Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38920 414 / 1e-145 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related AT1G02860 264 / 9e-87 BAH1, NLA nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) AT3G27330 51 / 6e-07 zinc finger (C3HC4-type RING finger) family protein (.1) AT1G18660 45 / 6e-05 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G198600 [exp] 586 / 0 AT2G38920 390 / 3e-136 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Potri.014G130300 [exp] 254 / 5e-83 AT1G02860 448 / 3e-159 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.002G205400 [exp] 252 / 5e-82 AT1G02860 437 / 5e-155 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.001G336832 [exp] 52 / 2e-07 AT3G27330 235 / 2e-69 zinc finger (C3HC4-type RING finger) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012290 [exp] 505 / 0 AT2G38920 392 / 5e-137 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Lus10015986 [exp] 503 / 0 AT2G38920 389 / 1e-135 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Lus10030375 [exp] 235 / 4e-75 AT1G02860 386 / 1e-134 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10007867 [exp] 129 / 3e-36 AT1G02860 199 / 3e-64 nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10032119 [exp] 51 / 7e-07 AT3G27330 251 / 1e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10022324 [exp] 51 / 8e-07 AT3G27330 251 / 4e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10022569 [exp] 42 / 0.0003 AT3G07200 81 / 3e-19 RING/U-box superfamily protein (.1.2) Lus10016796 [exp] 42 / 0.0004 AT2G23780 242 / 3e-81 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.016G064600.1 pacid=42810684 polypeptide=Potri.016G064600.1.p locus=Potri.016G064600 ID=Potri.016G064600.1.v4.1 annot-version=v4.1 ATGAAGTTTGGAGAGACATTCATGGAGTATTTACACGGAGAACAAGAAGGGTGTTTGGACAAATGTGCTCATGTTGAGTACAAACGACTCAAAAAAGTGT TAAAGAAATGCAGAAGCCAAGGTCCACCATCCACTTCTTGCAACGACGAGCAGCTACAAGAAAGAGACAGTGAACAGAATCATAGCTTGTCTCAATTCTG CCATTGCCAATCTTGCCCTTTGTGTGATCAGATGTTCTTTTCCGAATTGATGAGGGAAGCTTCAGATATAGCTGGGTGCTTTAGTTCCAGAGTTAGACAT CTCCTCCATCTTCATGTTGCCAGGGGAATGCAAAGATATAAACTTCGTCTACGTCAATGTTTCATAAATGATCAGCAGATCATGGTTGAAGAAGGGCGCA TGCTGATTGAATATGTTACCATGAATGCAATTGCTATCCGTAAAATTCTAAAGAAATATGATAAAGTACATTGCTCTATAAATGGGAAGAATTTCAAATC CAAGATGCGGTCTGAACATATAGAGCTTTTGCAATCACCTTGGCTAATAGAGTTGGGAGCCTTTTATTTGAATTTTGATGGAATAGATGGAGGGGAGTTT AGTGAGTTTTGCAGTCGGTTTTCCTGTGATCTCAGTGCTACAGAACCTGTTATGACACTGATGCTTCCAAATTATACAAAATTAGAATACGGCCTGACTT GTGCCATTTGCTTGGAGATGGTTTTTAATCCATATGCTTTGAGTTGTGGTCATCTTTTCTGCAAGTTGTGTGCTTGCTTAGCTGCTTCTGTGCTGATGGT TGAAGGCCTTAAATCTGCAAGTTCAAATGCAAAGTGCCCTGTCTGTAGAGAGGCTGGGGTATACACTAACGCAGTGCACATGTTGGAACTTGATCTGCTT GTGAAAAGAAGGTGCAAAGAGCACTGGAAAGAGAGGATGGTTGCTGAACGTGCTGAGACCGTAAAGCAAACCAGGGAGTATTGGGATTTACAGACCAAAT ATGCGATTGGCTATTGA
AA sequence Show only first row Show all	>Potri.016G064600.1 pacid=42810684 polypeptide=Potri.016G064600.1.p locus=Potri.016G064600 ID=Potri.016G064600.1.v4.1 annot-version=v4.1 MKFGETFMEYLHGEQEGCLDKCAHVEYKRLKKVLKKCRSQGPPSTSCNDEQLQERDSEQNHSLSQFCHCQSCPLCDQMFFSELMREASDIAGCFSSRVRH LLHLHVARGMQRYKLRLRQCFINDQQIMVEEGRMLIEYVTMNAIAIRKILKKYDKVHCSINGKNFKSKMRSEHIELLQSPWLIELGAFYLNFDGIDGGEF SEFCSRFSCDLSATEPVMTLMLPNYTKLEYGLTCAICLEMVFNPYALSCGHLFCKLCACLAASVLMVEGLKSASSNAKCPVCREAGVYTNAVHMLELDLL VKRRCKEHWKERMVAERAETVKQTREYWDLQTKYAIGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38920			SPX (SYG1/Pho81/XPR1) domain-c...		Potri.016G064600 [exp]	0	1
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Potri.004G153100 [exp]	1.73	0.8071
AT4G06744			Leucine-rich repeat (LRR) fami...		Potri.009G098700 [exp]	2.44	0.7993
AT1G49310			unknown protein		Potri.004G153200 [exp]	5.47	0.7677
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.017G085000 [exp]	8.66	0.7726
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Potri.014G156400 [exp]	10.67	0.7244	Pt-NFR1.2
AT2G38820			Protein of unknown function (D...		Potri.007G109700 [exp]	11.83	0.7578
AT2G45420	AS2	LBD18, ASL20	LOB domain-containing protein ...		Potri.002G149000 [exp]	15.29	0.7646
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Potri.002G151900 [exp]	16.24	0.7508
AT3G09760			RING/U-box superfamily protein...		Potri.006G129000 [exp]	16.58	0.7081
AT3G57200			unknown protein		Potri.006G045500 [exp]	17.77	0.7678

Compare expression of checked genes

Potri.016G064600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.