Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06580 885 / 0 FAD-linked oxidases family protein (.1) AT4G36400 151 / 3e-39 D2HGDH D-2-hydroxyglutarate dehydrogenase, FAD-linked oxidases family protein (.1.2) AT5G21482 54 / 2e-07 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) AT5G56970 47 / 2e-05 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT2G46760 44 / 0.0002 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G44390 44 / 0.0004 FAD-binding Berberine family protein (.1) AT3G63440 43 / 0.0005 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G018600 [exp] 161 / 5e-43 AT4G36400 817 / 0.0 D-2-hydroxyglutarate dehydrogenase, FAD-linked oxidases family protein (.1.2) Potri.002G178300 [exp] 61 / 1e-09 AT2G46760 785 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.002G178400 [exp] 56 / 4e-08 AT2G46760 809 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.016G040300 [exp] 53 / 5e-07 AT3G47930 794 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2) Potri.006G047900 [exp] 49 / 8e-06 AT2G41510 772 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.006G152500 [exp] 48 / 1e-05 AT5G56970 603 / 0.0 cytokinin oxidase 3 (.1) Potri.001G462800 [exp] 48 / 2e-05 AT1G30760 659 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G020900 [exp] 47 / 2e-05 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.003G203600 [exp] 46 / 8e-05 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012289 [exp] 889 / 0 AT5G06580 825 / 0.0 FAD-linked oxidases family protein (.1) Lus10015987 [exp] 844 / 0 AT5G06580 777 / 0.0 FAD-linked oxidases family protein (.1) Lus10028342 [exp] 159 / 8e-42 AT4G36400 788 / 0.0 D-2-hydroxyglutarate dehydrogenase, FAD-linked oxidases family protein (.1.2) Lus10041792 [exp] 133 / 4e-33 AT4G36400 682 / 0.0 D-2-hydroxyglutarate dehydrogenase, FAD-linked oxidases family protein (.1.2) Lus10004735 [exp] 54 / 3e-07 AT2G46760 653 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10016363 [exp] 49 / 7e-06 AT3G63440 483 / 9e-169 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10026471 [exp] 49 / 1e-05 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Lus10002688 [exp] 49 / 1e-05 AT2G46760 674 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10035433 [exp] 47 / 2e-05 AT2G41510 424 / 8e-146 cytokinin oxidase/dehydrogenase 1 (.1) Lus10012610 [exp] 47 / 3e-05 AT2G46760 761 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF02913 [poplar] [flax] FAD-oxidase_C FAD linked oxidases, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.016G064800.3 pacid=42809699 polypeptide=Potri.016G064800.3.p locus=Potri.016G064800 ID=Potri.016G064800.3.v4.1 annot-version=v4.1 ATGGCTTTCACTTGCTGGGTTTCTCGCCTACGCTCCTCCTATTCAAAAACCATCACCAACCTCCGCACCTCATTCTTCCACCATCTCCGAACTCGAGGAG CAAACACTACAGCAATCACCTCTCCATATCATTTCTCTAAACAGAATCCGTTCCGTTTTACCTGCTCAAACTCTCTCCTCCCTATCACTCTCGCTGGATC GCTCGCTATTCACTTCCAATCTCCGCCTCCTCTCTGCGATGCTTCTCTCGATTCCCCAAGCAGAGGAATTGGAGGAAAAGGAAGCACGGAGTTTGTGGTA CAAGGATCTCAAAAGCATTTACCGCAAGAGCTTATTGAAGAATTAAAAGCTATTTGTCAAGATAACATGAGTATGGATTATGATGAGAGGTATTTCCATG GAAAACCGCAACACAGTTTTCATAAAGCTGTAAATATTCCGGACGTCGTTGTTTTCCCAAGGTCAGAAGAGGAAGTTTCCAACATTGTGAAATCTTGCGA CAAACATAAGGTTCCAATTGTACCATATGGTGGAGCTACATCAATAGAGGGGCACACCTTATCACCTCATGGTGGTATTTGCATTGACATGTCACTAATG CAGAATGTAAAAGCATTACATGTTGAGGACATGGATGTGGTTGTGGAGCCTGGAATTGGGTGGATGGAGCTTAATGAATATCTAGAGCCTCATGGTCTAT TCTTTCCCCTTGACCCAGGGCCTGGTGCAACAATAGGGGGAATGTGTGCTACACGTTGCTCGGGATCTTTAGCTGTGAGGTATGGAACCATGCGAGATAA TGTCATTAGTCTTAAGGTAGTTCTTCCCAATGGAGATGTGGTCAAAACAGCTTCTCGTGCTCGAAAGAGTGCTGCAGGGTATGATTTGACTCGCCTGGTG ATCGGAAGTGAAGGGACCCTCGGTGTAATAACAGAGGTCACTTTACGACTTCAGAAAATTCCACAGCATTCAGTGGTTGCAATGTGCAATTTCCCTACAG TTAAGGATGCAGCTGATGTTGCCATTGCCACTATGCTGTCTGGTATACAGGTGTCAAGAGTGGAGCTAATGGACGAGGTTCAAGTGAGAGCTATCAATAT TGCTAATGACAAGAATTTACCTGAATTTCCAACTTTGATGTTTGAATTCATAGGCACAGAGGCATATGCACGTGAACAAACACTAATTGTTCAGAAGATC ATTTCTGAGCACAGGGGTTCAGATTTTGTTTTTGCAGAAGACCCTGAAGCTAAAAAAGAACTTTGGAAGATAAGGAAGGAGGCTCTATGGGCTTGCTTTG CAATGGAACCAAAATATGAGGCGATGATTTCAGACGTATGTGTTCCTCTATCACATCTTGCAGAATTGATATCGAGGTCCAAGAAAGAGCTGGATGCATC GCCATTGGTTTGCACAGTTATTGCTCATGCTGGTGATGGTAACTTTCACACTGTAATTCTTTTTGACCCGAACCAAGAAGATCACCGGCGGGAGGCAGAA AGATTGAATCATTTTATGGTCCATAGTGCTTTGTCAATGGAAGGAACATGTACTGGAGAACATGGAGTAGGAACAGGGAAAATGAAGTATCTCGAGAAAG AACTTGGAGTGGAGGCCCTGAAGACAATGAAAAGAATTAAAAATGCTTTAGATCCCAACAATATAATGAACCCAGGAAAGCTTATTCCACCCCATGTTTG CTTTTAG
AA sequence Show only first row Show all	>Potri.016G064800.3 pacid=42809699 polypeptide=Potri.016G064800.3.p locus=Potri.016G064800 ID=Potri.016G064800.3.v4.1 annot-version=v4.1 MAFTCWVSRLRSSYSKTITNLRTSFFHHLRTRGANTTAITSPYHFSKQNPFRFTCSNSLLPITLAGSLAIHFQSPPPLCDASLDSPSRGIGGKGSTEFVV QGSQKHLPQELIEELKAICQDNMSMDYDERYFHGKPQHSFHKAVNIPDVVVFPRSEEEVSNIVKSCDKHKVPIVPYGGATSIEGHTLSPHGGICIDMSLM QNVKALHVEDMDVVVEPGIGWMELNEYLEPHGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLV IGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTVKDAADVAIATMLSGIQVSRVELMDEVQVRAINIANDKNLPEFPTLMFEFIGTEAYAREQTLIVQKI ISEHRGSDFVFAEDPEAKKELWKIRKEALWACFAMEPKYEAMISDVCVPLSHLAELISRSKKELDASPLVCTVIAHAGDGNFHTVILFDPNQEDHRREAE RLNHFMVHSALSMEGTCTGEHGVGTGKMKYLEKELGVEALKTMKRIKNALDPNNIMNPGKLIPPHVCF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06580			FAD-linked oxidases family pro...		Potri.016G064800 [exp]	0	1
AT3G12760			unknown protein		Potri.008G083800 [exp]	41.95	0.5577
AT1G67190			F-box/RNI-like superfamily pro...		Potri.004G203300 [exp]	96.26	0.5887
AT1G04770			Tetratricopeptide repeat (TPR)...		Potri.003G177600 [exp]	104.82	0.5497
AT5G65660			hydroxyproline-rich glycoprote...		Potri.002G108100 [exp]	109.47	0.5848
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Potri.001G059900 [exp]	115.02	0.5411	G6PD.2
AT1G52500		ATMMH-2, ATMMH-...	FORMAMIDOPYRIMIDINE-DNA GLYCOS...		Potri.003G031100 [exp]	130.99	0.5687
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Potri.001G343500 [exp]	140.66	0.5539
AT3G48195			Phox (PX) domain-containing pr...		Potri.015G078300 [exp]	159.00	0.5434
AT2G27510		ATFD3	ferredoxin 3 (.1)		Potri.009G163800 [exp]	204.88	0.4949

Compare expression of checked genes

Potri.016G064800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.