Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06560 517 / 3e-180 Protein of unknown function, DUF593 (.1) AT3G11850 438 / 1e-149 Protein of unknown function, DUF593 (.1.2) AT3G54740 183 / 2e-52 Protein of unknown function, DUF593 (.1.2) AT5G57830 79 / 1e-15 Protein of unknown function, DUF593 (.1) AT5G16720 72 / 4e-13 Protein of unknown function, DUF593 (.1) AT2G24140 70 / 4e-13 Protein of unknown function, DUF593 (.1) AT4G30830 68 / 3e-12 Protein of unknown function, DUF593 (.1) AT1G08800 58 / 1e-08 Protein of unknown function, DUF593 (.1.2) AT4G13630 57 / 2e-08 Protein of unknown function, DUF593 (.1.2) AT1G04890 57 / 2e-08 Protein of unknown function, DUF593 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G199000 [exp] 832 / 0 AT5G06560 523 / 0.0 Protein of unknown function, DUF593 (.1) Potri.006G181300 [exp] 99 / 7e-22 AT5G57830 162 / 3e-45 Protein of unknown function, DUF593 (.1) Potri.018G103500 [exp] 95 / 1e-20 AT5G57830 169 / 5e-48 Protein of unknown function, DUF593 (.1) Potri.005G220600 [exp] 59 / 7e-09 AT1G08800 159 / 1e-39 Protein of unknown function, DUF593 (.1.2) Potri.012G073400 [exp] 57 / 2e-08 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1) Potri.013G043400 [exp] 56 / 4e-08 AT1G08800 227 / 2e-61 Protein of unknown function, DUF593 (.1.2) Potri.002G242900 [exp] 54 / 2e-07 AT4G13630 187 / 3e-51 Protein of unknown function, DUF593 (.1.2) Potri.015G068400 [exp] 52 / 5e-07 AT1G74830 340 / 1e-111 Protein of unknown function, DUF593 (.1) Potri.002G042500 [exp] 52 / 6e-07 AT2G30690 195 / 2e-52 Protein of unknown function, DUF593 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016203 [exp] 497 / 1e-172 AT5G06560 475 / 2e-164 Protein of unknown function, DUF593 (.1) Lus10029342 [exp] 492 / 2e-170 AT5G06560 473 / 4e-163 Protein of unknown function, DUF593 (.1) Lus10015990 [exp] 488 / 2e-169 AT5G06560 467 / 8e-162 Protein of unknown function, DUF593 (.1) Lus10012288 [exp] 483 / 2e-167 AT5G06560 464 / 2e-160 Protein of unknown function, DUF593 (.1) Lus10036599 [exp] 95 / 9e-21 AT4G30830 179 / 2e-52 Protein of unknown function, DUF593 (.1) Lus10035817 [exp] 84 / 4e-17 AT4G30830 175 / 4e-51 Protein of unknown function, DUF593 (.1) Lus10010774 [exp] 77 / 5e-15 AT5G57830 145 / 8e-40 Protein of unknown function, DUF593 (.1) Lus10022171 [exp] 76 / 1e-14 AT5G57830 141 / 3e-38 Protein of unknown function, DUF593 (.1) Lus10004050 [exp] 73 / 4e-13 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10016673 [exp] 64 / 2e-10 AT4G13630 237 / 6e-70 Protein of unknown function, DUF593 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [poplar] [flax] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Potri.016G065200.2 pacid=42810202 polypeptide=Potri.016G065200.2.p locus=Potri.016G065200 ID=Potri.016G065200.2.v4.1 annot-version=v4.1 ATGGATTTGGAAGTATTTTCTACCCAGGCTTCACCGTCGAGGGATTTGGTGAAGTGTTGTAATTGTGACTGCAGTTGTTCTTTAATAACCGGCTCATCTT CAGGGTCTTGGATCAGGTCTGTTAAAAGAAAACATGATGAGTTTGAGGAGGGAAATCGGTTTTATATACCTGGCTTTGATTCCTTCTCGAACCCACGAGT ACAGATTGAGAATGAATGTGCTGCTTTGCGTGAGATGGTTTCTAGCCAACAGCAGACGGTGCAGGATTTGTACACGGAATTGGAAGAGGAAAGGAATGCT GCTTCTTCAGCCGCAAATGAAGCCATGTCAATGATATTGAGGTTGCAGAGGGAGAAGGCAGAGATCCAAATGGAGGCAAGGCAATTTAAGCGGTTTGCTG AGGAAAAGATGGGGCATGATCAGCAGGAGATTTTGGCTCTGGAAGATCTTTTGTACAAGAGAGAGCAGGCTATTCAATCACTTACTTGTGAAATTCAGGC TTATAAGTATAGGATGATGAGTTATGGCCTTACAGAGGCAGAGGCAGAGGGTGATAAGGGTGAGAGGGGTGGGTTTAGCCGCAACACAAGCATGAATGAA AGTTTGGATGCGGCTCAATTAGAGTTTCCAGCTTATGAATACCCACCCCTGAAATGCAATTTGAATGAAAATCCAAATCCCATGGAGGGTGAAGATGATA TTGTGGATGTTGAGAAATATGCATTCAGTGAGACCCCACATGGTCGGGAGCAGTTGAAGAACTTGGAATATAGGATATATCAGATGGAGAAAAGCCCACG CAACATTCAGCAGGATGGTGATTTTTCTGGTACGAAGAATATTCTTGAGAAGGTGGTAGTTGGCCACTCTCCTAGGCGATCAAGGCACAGCAGGAGGTTC TCTGCAGATAGTTCAAGTTCATTGATGGGGATGTCTAGAGAAGTTGGTCCAGATTTTGTCACTGAATCTCCAAGATGCAAGTTAAGCAATAGCTTTAAGA AGACGGATTATGCTTTGCAAGTGGAAGATTACAAGGATTCAAGAAAGATGGATAATTCATCAGAATTTGGAGATGACACGAGTGACAGAGTTTATACCAT CGATTCTATCCATAACGGGGTCTCACAGAATGGTGTTACAGAACCAAAAGCTGGAATCGGGATTTATGAAGAGTATCTTTCAACTCCCAGAGAGACATTG GATGGACCTGATGTGAGTGATCCTGACATAAAAAAGCTCTACGTGAGACTTCAGGCACTCGAGGCTGATAGGGAATCTATGAGGCAAGCAATTATTTCAA TGCGGACTGATAAAGCACAAATGGTATTGTTGAAAGAGATAGCTCAACATCTGTGCAAGGAAATGTCTCCAGAAAGAAAATTGCCTGTGAAGAAGCCATC TCTTCTTGGAAGCTTTTCCTTCATGTCAATCTTTAAGTGGGTTGTGTCCTTTGTTTTCTGGAGAAAGAAAGCTCAACGAAGCAAGTATATGTTTGGGCTT TCCGCCACCAATGTCGGTTTGCTAATGCTTCTAGACAAAGGCCCCAGCACAAGGCAATGGAGATGTCTCATGAACACAAGTGTGAAACCATCAGTCAAAA TTCCTTAA
AA sequence Show only first row Show all	>Potri.016G065200.2 pacid=42810202 polypeptide=Potri.016G065200.2.p locus=Potri.016G065200 ID=Potri.016G065200.2.v4.1 annot-version=v4.1 MDLEVFSTQASPSRDLVKCCNCDCSCSLITGSSSGSWIRSVKRKHDEFEEGNRFYIPGFDSFSNPRVQIENECAALREMVSSQQQTVQDLYTELEEERNA ASSAANEAMSMILRLQREKAEIQMEARQFKRFAEEKMGHDQQEILALEDLLYKREQAIQSLTCEIQAYKYRMMSYGLTEAEAEGDKGERGGFSRNTSMNE SLDAAQLEFPAYEYPPLKCNLNENPNPMEGEDDIVDVEKYAFSETPHGREQLKNLEYRIYQMEKSPRNIQQDGDFSGTKNILEKVVVGHSPRRSRHSRRF SADSSSSLMGMSREVGPDFVTESPRCKLSNSFKKTDYALQVEDYKDSRKMDNSSEFGDDTSDRVYTIDSIHNGVSQNGVTEPKAGIGIYEEYLSTPRETL DGPDVSDPDIKKLYVRLQALEADRESMRQAIISMRTDKAQMVLLKEIAQHLCKEMSPERKLPVKKPSLLGSFSFMSIFKWVVSFVFWRKKAQRSKYMFGL SATNVGLLMLLDKGPSTRQWRCLMNTSVKPSVKIP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06560			Protein of unknown function, D...		Potri.016G065200 [exp]	0	1
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Potri.008G045300 [exp]	2.00	0.8075
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Potri.001G442600 [exp]	2.44	0.7774
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Potri.001G416600 [exp]	3.87	0.7806
AT5G56460			Protein kinase superfamily pro...		Potri.003G222600 [exp]	8.30	0.7121
AT2G37160			Transducin/WD40 repeat-like su...		Potri.006G129100 [exp]	9.79	0.7663
AT4G11860			Protein of unknown function (D...		Potri.001G112300 [exp]	12.32	0.7821
AT1G24560			unknown protein		Potri.008G183800 [exp]	12.40	0.7594
AT1G27595			unknown protein		Potri.002G107400 [exp]	14.21	0.8044
AT5G50010	bHLH		sequence-specific DNA binding ...		Potri.002G103300 [exp]	16.73	0.7679
AT3G05990			Leucine-rich repeat (LRR) fami...		Potri.008G150200 [exp]	18.65	0.7072

Compare expression of checked genes

Potri.016G065200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.