Plant FIBer expression Database

Potri.016G065400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G06550 711 / 0 unknown protein
AT1G78280 244 / 2e-71 transferases, transferring glycosyl groups (.1)
AT5G63080 91 / 1e-19 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
AT3G20810 67 / 7e-12 JMJ30, JMJD5 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
AT5G19840 56 / 5e-08 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G099400
[exp]
247 / 4e-72 AT1G78280 1234 / 0.0 transferases, transferring glycosyl groups (.1)
Potri.015G080400
[exp]
102 / 3e-23 AT5G63080 548 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Potri.001G016200
[exp]
68 / 5e-12 AT3G20810 540 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
Potri.005G215200
[exp]
51 / 1e-06 AT5G19840 579 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Potri.009G025400
[exp]
44 / 0.0002 AT3G45880 417 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016202
[exp]
740 / 0 AT5G06550 724 / 0.0 unknown protein
Lus10029343
[exp]
740 / 0 AT5G06550 730 / 0.0 unknown protein
Lus10010350
[exp]
252 / 6e-74 AT1G78280 1211 / 0.0 transferases, transferring glycosyl groups (.1)
Lus10036482
[exp]
251 / 2e-73 AT1G78280 1194 / 0.0 transferases, transferring glycosyl groups (.1)
Lus10001249
[exp]
54 / 1e-07 AT5G63080 232 / 8e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Lus10031247
[exp]
52 / 7e-07 AT3G20810 500 / 8e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
Lus10000493
[exp]
44 / 0.0002 AT5G19840 545 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF12937 F-box-like F-box-like
CL0029 Cupin PF13621 Cupin_8 Cupin-like domain
Representative CDS sequence
>Potri.016G065400.1 pacid=42810027 polypeptide=Potri.016G065400.1.p locus=Potri.016G065400 ID=Potri.016G065400.1.v4.1 annot-version=v4.1
ATGCTAACTTCCACGAACTTATTGTCTCGAATCATAAAAAAGAAGAGACACAAAAAACCCAAAACGAAAACAAGAAACAAAAGACAAGAAACCAAAGAAG
ATCCTATTGAACAAGATGAACTAGAAGAAGACACTGAAGGGTTTAATCTAAAAACCTCAGCTCCATCAAATACTTATGGGGTTCAGCCACTTGGCAATCT
TTACTTCAATCGAGGCTCTATTAACTCAAGAAACACCGGTTTAGGTAATCTTCAAATCCTGACTGATGAGTTAGTTCTTGATATTTTAGGATTTCTTGAT
GGAACCCAGTTAGGAGTCTTAGCTACTGTTAGCAAGTCATTTTACGTTTTCACTAATCATGAGCCTTTATGGAGAAACCTTGTATTGGATAAGTTAAATG
GTGAGTTTCTGTTTAATGGGTCATGGAAGTCTACTTATATTGCTGGCATTTACCCTTTATTTGACGTTAATGGCTGCTCAAGTTTGAAAGTTAGAGATTT
TTATTCTGATTATCTTTTTCAAAGTTGGTTATGTGCTAGTCTTGAAATGAAACCTGAATGGCTTGAGAGAGATAATATTGTTAGAAAGAAAGGTATTTCT
GTTGAGGAATTTGTGATGAATTTTGAGGAGCCAAATAAGCCGGTATTGTTGGAAAGGTGTATCGATAATTGGGCTGCATTGCAAAAATGGGATAAGGATT
ATTTGGTTAGTGTGTGTGGTGATGTGAAGTTTGCAGCTGGGCCGGTGGAGATGAGGCTTCAAGAGTATTTTAGGTATTCGGATCAAGTGAGGGAAGAACG
TCCATTGTATCTTTTTGACCCGAAATTCGCTGAGAAGATTCCTGTTTTGGGTTCTGAATATGAGGTTCCATTGTACTTTAGGGAGGATTTGTTTAGTGTT
TTAGGTAATGAGAGGCCAGATTATAGGTGGGTCATAATTGGCCCTGCAGGATCTGGCTCATCATTTCACATAGATCCTAATTCTACATCTGCTTGGAATG
CAGTGATTAAGGGGTCTAAGAAGTGGATTTTGTTCCCACCTGATGTGGTACCTCCTGGTGTTTATCCAAGCCCAGATGGTGCAGAGGTAGCATGTCCTGT
TTCCATAATGGAATGGTTCATGAACTTTTATGGTGCAACAAGGAACTTGAAAAGGAGACCTATTGAGTGCATCTGTAAGGCTGGTGAAGTGATCTTTGTG
CCCAATGGTTGGTGGCATTTGGTAATCAACTTGGAAGAATCCATTGCTATTACACAGAATTATGTCAGCAGGAGAAATCTGCTGAATGTTTTGGATTTTC
TTAAGAGGCCAAATGCAGGGGAACTAGTGTCTGGAACTCGAGACCGTGTGAATTTGCATGATAAGTTTGAGAATGCTATTGAGTCCACTTTCCCTGGAAC
TATCGATCAATTGGTGCAGAAAGCAGAGGAGGAAAAGGCCCAAGAGAAAAAACTTTCCTTCTGGGACTCAGTGACTGATTCCCATGCTGGTGCTTTCAAG
TTCTCTTTCTAA
AA sequence
>Potri.016G065400.1 pacid=42810027 polypeptide=Potri.016G065400.1.p locus=Potri.016G065400 ID=Potri.016G065400.1.v4.1 annot-version=v4.1
MLTSTNLLSRIIKKKRHKKPKTKTRNKRQETKEDPIEQDELEEDTEGFNLKTSAPSNTYGVQPLGNLYFNRGSINSRNTGLGNLQILTDELVLDILGFLD
GTQLGVLATVSKSFYVFTNHEPLWRNLVLDKLNGEFLFNGSWKSTYIAGIYPLFDVNGCSSLKVRDFYSDYLFQSWLCASLEMKPEWLERDNIVRKKGIS
VEEFVMNFEEPNKPVLLERCIDNWAALQKWDKDYLVSVCGDVKFAAGPVEMRLQEYFRYSDQVREERPLYLFDPKFAEKIPVLGSEYEVPLYFREDLFSV
LGNERPDYRWVIIGPAGSGSSFHIDPNSTSAWNAVIKGSKKWILFPPDVVPPGVYPSPDGAEVACPVSIMEWFMNFYGATRNLKRRPIECICKAGEVIFV
PNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLKRPNAGELVSGTRDRVNLHDKFENAIESTFPGTIDQLVQKAEEEKAQEKKLSFWDSVTDSHAGAFK
FSF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G06550 unknown protein Potri.016G065400
[exp]
0 1
AT5G13180 NAC VNDIP2, ANAC083... VND-interacting 2, NAC domain ... Potri.007G127700
[exp]
34.46 0.6164 NAC149
AT4G23740 Leucine-rich repeat protein ki... Potri.015G023500
[exp]
38.07 0.6383
AT1G64295 F-box associated ubiquitinatio... Potri.007G037500
[exp]
67.26 0.6250
AT1G09300 Metallopeptidase M24 family pr... Potri.013G007100
[exp]
83.85 0.5936
AT5G14040 PHT3;1 phosphate transporter 3;1 (.1) Potri.012G105100
[exp]
84.33 0.6227 PtrPht3_3
AT1G25220 WEI7, TRP4, ASB... WEAK ETHYLENE INSENSITIVE7, TR... Potri.010G102200
[exp]
129.21 0.6011 ASB1,Pt-TRP4.2
AT5G26830 Threonyl-tRNA synthetase (.1) Potri.008G145600
[exp]
150.59 0.5848 THRRS.1
AT1G02170 AtMCP1b, ATMC1,... LSD ONE LIKE 3, ARABIDOPSIS TH... Potri.017G052600
[exp]
161.07 0.5768
AT1G61620 phosphoinositide binding (.1) Potri.011G040000
[exp]
281.99 0.5489

Potri.016G065400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.