Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06540 828 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40405 583 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 566 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 547 / 0 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 530 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G37380 493 / 4e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49142 489 / 7e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22690 484 / 1e-161 unknown protein AT2G29760 479 / 3e-161 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 474 / 3e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G011000 [exp] 558 / 0 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 556 / 0 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 549 / 0 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 545 / 0 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G191200 [exp] 540 / 0 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 521 / 7e-179 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 517 / 1e-176 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G231200 [exp] 511 / 2e-175 AT5G66520 504 / 1e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G001000 [exp] 510 / 1e-174 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029344 [exp] 927 / 0 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014298 [exp] 538 / 0 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 533 / 0 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 532 / 0 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 528 / 0 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029793 [exp] 507 / 1e-172 AT1G04840 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020743 [exp] 506 / 2e-172 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 505 / 2e-171 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 500 / 3e-169 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013319 [exp] 490 / 3e-167 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.016G065500.1 pacid=42808936 polypeptide=Potri.016G065500.1.p locus=Potri.016G065500 ID=Potri.016G065500.1.v4.1 annot-version=v4.1 ATGAGTGGTTTTAGTAACTTAGTTTTAAGGAAACTAGAGCTAAAAAATCCAAAACTTTCGTTGTTAGAATCTTGCACCACTCTCTCCCACCTGAAAATCA TACATGCCCACTTGATAAGAGCCCACACAATCTTTGATGTTTTTGCTGCAAGTTGCTTAATCTCCATTAGCATAAACAAGAACTTGCTTGATTATGCAGC ACAAGTCTTTTACCAAATCCAAAACCCAAATCTTTTTATCTATAATTCATTTATAAGGGGGTTCTCTGGAAGCAAAGACCCGGATAAGTCCTTCCATTTT TATGTCCAATCAAAGAGAAATGGCTTAGTTCCTGATAATCTTACGTACCCATTTTTAGTCAAGGCTTGTACTCAAAAGGGTTCTTTAGATATGGGTATAC AAGCTCATGGTCAAATAATTAGGCATGGGTTTGATAGTGATGTTTATGTTCAAAATTCACTTGTTACTATGTATTCTACTTTAGGGGATATTAAGTCTGC TAGTTATGTTTTTAGGAGAATTTCATGTTTAGATGTTGTTTCTTGGACTTCAATGGTAGCTGGTTATATTAAATCAGGAGATGTTACGTCTGCTCGGAAA TTGTTTGATAAAATGCCTGAAAAAAACTTGGTTACTTGGAGTGTAATGATTAGTGGGTATGCGAAAAATAGTTTTTTTGACAAGGCAATAGAATTGTATT TTTTACTTCAATCAGAAGGGGTGCACGCTAATGAGACAGTGATGGTTAGTGTAATAGCTTCATGTGCTCATTTAGGTGCACTTGAACTTGGAGAAAGAGC ACATGATTATATTTTGAGAAATAAGATGACTGTGAATTTGATTCTGGGAACTGCACTAGTAGATATGTATGCAAGATGTGGAAGTATTGATAAAGCTATC TGGGTTTTCGACCAACTTCCAGGGAGAGATGCTTTGAGCTGGACGACTCTAATTGCTGGATTTGCAATGCATGGTTATGCCGAGAAAGCACTTGAGTACT TCTCACGAATGGAGAAGGCAGGGTTAACACCGAGAGAGATAACGTTTACTGCTGTTTTATCAGCTTGTAGTCATGGGGGATTAGTTGAAAGAGGATTGGA ATTATTTGAGAGCATGAAAAGAGATTATAGGATTGAGCCTAGGTTGGAACACTATGGGTGCATGGTTGACCTGCTTGGTCGAGCAGGGAAGTTAGCAGAA GCTGAGAAATTTGTTAATGAAATGCCTATGAAGCCTAATGCACCAATTTGGGGAGCGTTGCTTGGAGCTTGCCGAATTCATAAGAATTCAGAAATTGCAG AAAGAGCTGGGAAGACTTTGATTGAGTTAAAGCCAGAACACAGTGGTTACTATGTGCTTCTTTCTAACATCTATGCACGCACAAACAAGTGGGAGAATGT TGAGAACATCAGACAGATGATGAAGGAAAGAGGAGTTGTGAAACCACCAGGTTACACTCTGTTTGAGATGGATGGGAAAGTTCATAAATTCACCATTGGT GATAAAACCCACCCGGAAATTCAGCAGATTGAAAGGATGTGGGAAGAGATCCTTGGGAAGATAAGACTGGCAGGATACAGTGGAAATAATGATGATGCAT TGTTTGACATAGATGAAGAGGAAAAAGAAAGCAACATACACAGGCACAGCGAGAAGCTTGCTATTGCATATGCGATTATGAGAACTAAAGGTCACGATCC CATTCGAATAGTGAAGAACTTGCGGGTATGTGAAGACTGCCACACCGCTACAAAGCTGATTTCTAAGGTGTATGAACGGGAGTTGATTGTTAGAGATCGG AACAGGTTCCATCATTTTAAGGGAGGAGCCTGTTCTTGCATGGATTACTGGTAA
AA sequence Show only first row Show all	>Potri.016G065500.1 pacid=42808936 polypeptide=Potri.016G065500.1.p locus=Potri.016G065500 ID=Potri.016G065500.1.v4.1 annot-version=v4.1 MSGFSNLVLRKLELKNPKLSLLESCTTLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHF YVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARK LFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAI WVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAE AEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIG DKTHPEIQQIERMWEEILGKIRLAGYSGNNDDALFDIDEEEKESNIHRHSEKLAIAYAIMRTKGHDPIRIVKNLRVCEDCHTATKLISKVYERELIVRDR NRFHHFKGGACSCMDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06540			Pentatricopeptide repeat (PPR)...		Potri.016G065500 [exp]	0	1
AT3G22450			Ribosomal L18p/L5e family prot...		Potri.008G153100 [exp]	1.41	0.9431
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.007G068600 [exp]	1.73	0.9465
AT2G22070			pentatricopeptide (PPR) repeat...		Potri.007G085500 [exp]	3.00	0.9371
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Potri.002G136800 [exp]	4.00	0.9270
AT5G08305			Pentatricopeptide repeat (PPR)...		Potri.007G073100 [exp]	4.24	0.9351
AT4G14050			Pentatricopeptide repeat (PPR)...		Potri.001G321700 [exp]	4.47	0.9353
AT1G69350			Tetratricopeptide repeat (TPR)...		Potri.008G093000 [exp]	4.47	0.9367
					Potri.004G118950 [exp]	6.63	0.9006
AT5G08310			Tetratricopeptide repeat (TPR)...		Potri.005G090600 [exp]	6.70	0.9260
AT1G31430			Pentatricopeptide repeat (PPR-...		Potri.003G088600 [exp]	10.95	0.8908

Compare expression of checked genes

Potri.016G065500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.