Plant FIBer expression Database

Potri.016G065600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G54750 557 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G199200
[exp]
1004 / 0 AT3G54750 572 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015991
[exp]
697 / 0 AT3G54750 488 / 4e-166 unknown protein
Lus10016201
[exp]
663 / 0 AT3G54750 492 / 2e-168 unknown protein
Lus10029345
[exp]
652 / 0 AT3G54750 482 / 2e-164 unknown protein
Lus10012287
[exp]
91 / 1e-21 AT3G54750 68 / 3e-14 unknown protein
PFAM info
Representative CDS sequence
>Potri.016G065600.2 pacid=42810542 polypeptide=Potri.016G065600.2.p locus=Potri.016G065600 ID=Potri.016G065600.2.v4.1 annot-version=v4.1
ATGGCAAAGGTTGCTCTACCGGGAGGTTCTTTAGGTTCTGTTGATGTTCAAATTGGTGGCGCTGCTGCTGCTCTAACTGATGGTACAATGGTTAAAAGGA
AGACCCCGTCCGAACTGAGAGGAGAGCAGCTGAGGAGGAAAAAGGTTATAGAGATTGTAGATGAATCTCCAGCCCCACTGGGTTCAAAGAATAATGGTAT
TGAGATGGATAATGGGCTTAGGAAACCAGATGCATCAAGGACTCCTAGATACATTAACACCCGCATGGATGAAGTTTATCCTGTCAAAAAATCCAGGCTT
AGGATGCTTTCTGTAAAAGACAGTGCAAAGGAAAATACATCAACTGAACAAACTAATAGCCTGAAGAATATCTCTGTGCTTTCAACTCTGGCTGCCAAGA
GACAGCAACTGTCATGTACAGAGAATTCGGTTGCTTCTGACGAAGTTTTGAAAGATGATGTGGTACAACCTCATCAAACAATCAAAAACTGCAGTCAAAG
TATATTTCACAGTGTTACTGAGCTTTCATCTAGTGGTGAAAGGTCATCTGGCTTGGCATTTGTTGAAATGGATAAAGCATTGAAAGGACTTGTGGCCCAT
GAACCGCCTGACACTTCTGGTTTAAATGCTGATTCTTCTGAAAAAGCTGGCAATCATGGTGGCAATTTCTGCTCTGAATGCCATATAGCTGGCAAAAAGG
CACCTCTTGATCTTACTTTGAAAACTAGAATGCGGGTGGCATCCTCCTGTTCAGTTAATTGGATTCATAGGTCAATTATGAGCAGCACCTACAACGGCAT
GCCACAGCTTGCATCCCAATTTGGTGATTCCAAGGACAGTAGTAGCTCTGGGCAGGCAATGACTTCTCAGATCCTTAGTTCTAAAGCTTTGCATTCATGG
GTTTACCCTCAATCTACCCTGCCTTCTGCTGTTATATCAGTGCTAACCTCATCAGCAATTGAGGGAGATTTTTTGAGAAAACGGCAGCTGGCATGGGAGG
ATTCTTTTCGAAGTCTTTATTACATGCTTCGAAAGAACATTTGCAATATTTTTTATGTGTGCACTTCACAATTTGTGGTGATGTTCACTGGTAGTGATGG
CTCAGGATGTACCAAACACCTATGCAATGCTTACATCTCCCAGTCGACAAGAGGTCTGAGGTCATTGTTGAGAGAACATGACGTTTGTTTCTCTATGCCA
CTTTGTTATTCTAAAGTAGAGCAAGTCACCACTGAAGATTTAGTTGAGCTTTCTGAGATTGAGAAACAAAATTTGGGCCAGACTCGTCGCCTTAGTTCCT
TGTCTGATGTTGATAATAGCCCACAATCACTGATGGCTTTCTGTGGAAATAAGAATGTAAATGGGTTGTATGATTTTTTGTTAAATTACAGATCTTCCCT
TACCTTTTTGTCCGGAGTAGATGTTCCTGTATTGTACTCACCTGTTCCCTTTCAGAATGCTGCTCTTTCTTCTCCGGAGATAAAATGCGTGGAGGTAAAA
AGAGCTCACCATATTGCTGCCTCCCCTAAAGAATCTACAGTTAAAGATACTGAATCCAGTCAAGGTTCATCCACTGGGCTCTTATCCAGCATTGAAATTA
AGGATGCATATATTCCATCATGGATTGTTTGCCGTGTATGTGCACTCATGGACTCTGATGGGAGAAGCTTTGAGGCAAGCTTTACAACAGAACGCACCTC
TATTGGCTTGAATGTTGCTCTTGAGACAGCCTGCGAAAAACCTGATCAAGCTGCGGCGGTTGAAGGCTTGCAAGAAAGTAGTCATTCTTTTGGTATTCCA
GAAGCCTCCGTTGCTCCTTGCTTGCGTTCAGGCTTCTTAAAAGGCTTGAAGTACAGCGATGGTTCTTATGTGGCTTCCCTCTCTCCTGTCTAA
AA sequence
>Potri.016G065600.2 pacid=42810542 polypeptide=Potri.016G065600.2.p locus=Potri.016G065600 ID=Potri.016G065600.2.v4.1 annot-version=v4.1
MAKVALPGGSLGSVDVQIGGAAAALTDGTMVKRKTPSELRGEQLRRKKVIEIVDESPAPLGSKNNGIEMDNGLRKPDASRTPRYINTRMDEVYPVKKSRL
RMLSVKDSAKENTSTEQTNSLKNISVLSTLAAKRQQLSCTENSVASDEVLKDDVVQPHQTIKNCSQSIFHSVTELSSSGERSSGLAFVEMDKALKGLVAH
EPPDTSGLNADSSEKAGNHGGNFCSECHIAGKKAPLDLTLKTRMRVASSCSVNWIHRSIMSSTYNGMPQLASQFGDSKDSSSSGQAMTSQILSSKALHSW
VYPQSTLPSAVISVLTSSAIEGDFLRKRQLAWEDSFRSLYYMLRKNICNIFYVCTSQFVVMFTGSDGSGCTKHLCNAYISQSTRGLRSLLREHDVCFSMP
LCYSKVEQVTTEDLVELSEIEKQNLGQTRRLSSLSDVDNSPQSLMAFCGNKNVNGLYDFLLNYRSSLTFLSGVDVPVLYSPVPFQNAALSSPEIKCVEVK
RAHHIAASPKESTVKDTESSQGSSTGLLSSIEIKDAYIPSWIVCRVCALMDSDGRSFEASFTTERTSIGLNVALETACEKPDQAAAVEGLQESSHSFGIP
EASVAPCLRSGFLKGLKYSDGSYVASLSPV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G54750 unknown protein Potri.016G065600
[exp]
0 1
AT5G60860 AtRABA1f RAB GTPase homolog A1F (.1) Potri.013G123600
[exp]
6.08 0.9243 Pt-RAB11.8
AT4G18550 AtDSEL Arabidopsis thaliana DAD1-like... Potri.011G064400
[exp]
6.48 0.9179
AT4G22250 RING/U-box superfamily protein... Potri.014G158900
[exp]
7.14 0.9157
AT1G34430 EMB3003 embryo defective 3003, 2-oxoac... Potri.019G084900
[exp]
7.48 0.9106
AT5G20540 ATBRXL4, BRX-LI... BREVIS RADIX-like 4 (.1) Potri.018G064900
[exp]
9.16 0.9017
AT3G12120 FAD2 fatty acid desaturase 2 (.1.2) Potri.001G012500
[exp]
9.59 0.8849
AT5G60150 unknown protein Potri.005G131500
[exp]
10.95 0.8925
AT1G06920 OFP ATOFP4, OFP4 ARABIDOPSIS THALIANA OVATE FAM... Potri.013G155200
[exp]
12.96 0.8771
AT4G16850 unknown protein Potri.018G097900
[exp]
16.49 0.8979
AT1G56340 AtCRT1a, CRT1 calreticulin 1a (.1.2) Potri.005G015100
[exp]
18.16 0.8961

Potri.016G065600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.