Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06820 903 / 0 CCR2, CRTISO CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) AT1G57770 182 / 4e-50 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G199600 [exp] 1106 / 0 AT1G06820 877 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Potri.003G005800 [exp] 202 / 6e-57 AT1G57770 869 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.007G025300 [exp] 64 / 2e-10 AT5G49555 943 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.002G013100 [exp] 44 / 0.0005 AT1G62830 964 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029347 [exp] 915 / 0 AT1G06820 913 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Lus10016199 [exp] 908 / 0 AT1G06820 912 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Lus10037348 [exp] 177 / 1e-47 AT1G57770 900 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10035770 [exp] 159 / 2e-41 AT1G57770 832 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10041743 [exp] 63 / 4e-10 AT5G49555 933 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10024010 [exp] 61 / 1e-09 AT5G49555 607 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10014308 [exp] 59 / 7e-09 AT5G49555 850 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01593 [poplar] [flax] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.016G066000.4 pacid=42809984 polypeptide=Potri.016G066000.4.p locus=Potri.016G066000 ID=Potri.016G066000.4.v4.1 annot-version=v4.1 ATGAGTTTAGGATTCAAGAATTCCCTATTTTTTGGCCAGTTCAATACTGTCCAGTTAGGAAGTTCCAAATCCAGAAGCCAAAAACATAGGATTCTGTCTA TAGAACCTGTCCGAACCTCAGTTCTCGATGGTTATATTGTACCCAGAAACATAAAAGGCAAAATTGACAATCTTGGTAAAGTAAAGTTGAATAAGGACTT TGTTTTGAGGTCAAAGTCAGTGTTGACTGTGGATAAAGAGGTGGATGTTGATGGAAATGGAGGGTTGGGCAGAGAGAGGAGCAATTACGATGCAATTGTT ATTGGGTCTGGTATCGGTGGGTTGGTTGCTGCTACACAGTTGGCAGTGAAGGGAGCTAAAGTTTTGGTCTTGGAGAAGTATGTGATTCCTGGTGGGAGTT CTGGGTATTATGAGAGGGATGGATATACTTTTGATGTTGGCTCTTCTGTTATGTTTGGTTTCAGTGATAAGGGCAACCTAAATTTGATAACACAGGCATT GGCAGCAGTTGGCTGTGAAATGGAGGTGATTCCTGACCCAACTACTGTCCATTTTCATCTACCCAATGACCTTTCTGTTCAAGTTCACAGAGAGTACATC GACTTCATCTCAGAACTTGCTGCTAAATTTCCCCATGAAAAGGATGGGATCCTTAAATTCTACGGTGAATGCTGGAAGATATTCAATGCCTTGAACTCTC TGGAACTGAAGTCACTTGAGGAGCCAATCTACCTGTTTGGACAATTTTTTCAGAAACCTCTTGAATGCTTGACACTGGCTTATTATCTACCTCAAAATGC TGGAGATATTGCTCGAAAGTACATAAAGGATCCTCAGTTATTGTCTTTCATTGATGCAGAGTGTTTCATAGTGAGCACAGTCAATGCTTTGCAGACTCCA ATGATCAATGCGGCCATGGTTCTATGTGATAGGCATTTTGGAGGGATCAATTACCCTGTTGGTGGGGTTGGTGGAATTGCGAAGTCCTTATCAAAAGGTC TGGTTGATCAGGGCAGTGAAATACTTTACAGGGCAAATGTGACCAACATCATTCTTGAGCATGGAAAGGCTGTAGGAGTAAGGCTTTCAGATGGAAGGGA GTTCTTTGGAAAAACCATAATCTCAAATGCTACTAGATGGGATACCTTCGGGAAGTTGTTAAAAGGAGAAACCCTTCCAAAAGAAGAAGAAAATTTCCAA AAAGTTTATGTTAAGGCTCCATCTTTTCTTTCCATTCATATGGGTGTTAAAGCCGAGGTTCTACCACCAGATACAGATTGCCACCACTTTGTGCTTGAGG ATGACTGGGCAAGATTAGAGGAGCCTTATGGAAGCATATTTCTAAGCATTCCAACTATTCTTGATTCGTCATTGGCTCCGGAAGGCCATCATATACTTCA CATATTTACAACATCTTCCATTGAAGACTGGGAGGGACTCTCGACAAAGGACTATGAGGCCAAGAAGAAGGTTGCGGCTGATGAGATTATAAGCAGATTG GAGAAGAAACTTTTTCCAGGGATCAGATCATCAATTGCTTTCATGGAGGTGGGTTCACCCAAGACACACAGGCGGTACCTGGCTCGTGATAAGGGTACTT ATGGACCCATGCCACGCAGAACTCCTAAAGGTTTATTGGGAATGCCATTCAATACGACAGCTGTAGATGGTCTTTACTGTGTTGGCGATAGCTGCTTTCC AGGACAGGGCGTGATAGCTGTAGCTTTTTCAGGAGTAATGTGTGCTCATCGAGTAGCTGCTGATATTGGCATTGAGAAAAAGTCTCCTGTACTGGATGCT GCTCTCCTTCGGCTTCTTGGCTGGTTAAGGACCTTGGCATGA
AA sequence Show only first row Show all	>Potri.016G066000.4 pacid=42809984 polypeptide=Potri.016G066000.4.p locus=Potri.016G066000 ID=Potri.016G066000.4.v4.1 annot-version=v4.1 MSLGFKNSLFFGQFNTVQLGSSKSRSQKHRILSIEPVRTSVLDGYIVPRNIKGKIDNLGKVKLNKDFVLRSKSVLTVDKEVDVDGNGGLGRERSNYDAIV IGSGIGGLVAATQLAVKGAKVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEMEVIPDPTTVHFHLPNDLSVQVHREYI DFISELAAKFPHEKDGILKFYGECWKIFNALNSLELKSLEEPIYLFGQFFQKPLECLTLAYYLPQNAGDIARKYIKDPQLLSFIDAECFIVSTVNALQTP MINAAMVLCDRHFGGINYPVGGVGGIAKSLSKGLVDQGSEILYRANVTNIILEHGKAVGVRLSDGREFFGKTIISNATRWDTFGKLLKGETLPKEEENFQ KVYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWARLEEPYGSIFLSIPTILDSSLAPEGHHILHIFTTSSIEDWEGLSTKDYEAKKKVAADEIISRL EKKLFPGIRSSIAFMEVGSPKTHRRYLARDKGTYGPMPRRTPKGLLGMPFNTTAVDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIGIEKKSPVLDA ALLRLLGWLRTLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06820		CCR2, CRTISO	CAROTENOID AND CHLOROPLAST REG...		Potri.016G066000 [exp]	0	1
AT5G60540		EMB2407, ATPDX2...	EMBRYO DEFECTIVE 2407, pyridox...		Potri.009G012700 [exp]	6.16	0.9031
AT3G04870		SPC1, PDE181, Z...	SPONTANEOUS CELL DEATH 1, PIGM...		Potri.005G050700 [exp]	10.29	0.9086
AT2G16070		PDV2	plastid division2 (.1.2)		Potri.009G111000 [exp]	22.04	0.8482
AT5G13030			unknown protein		Potri.001G013900 [exp]	33.63	0.8568
AT1G64950		CYP89A5	"cytochrome P450, family 89, s...		Potri.007G088086 [exp]	35.84	0.8737
AT1G68300			Adenine nucleotide alpha hydro...		Potri.010G123200 [exp]	38.23	0.8554
AT2G22870		EMB2001	embryo defective 2001, P-loop ...		Potri.007G006300 [exp]	43.47	0.8689
AT2G02590			unknown protein		Potri.010G034400 [exp]	53.37	0.8542
AT3G04870		SPC1, PDE181, Z...	SPONTANEOUS CELL DEATH 1, PIGM...		Potri.013G037700 [exp]	59.32	0.8601
AT3G54960		ATPDI1, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.008G040100 [exp]	69.35	0.8434

Compare expression of checked genes

Potri.016G066000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.