Plant FIBer expression Database

Potri.016G066300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G11690 62 / 5e-12 unknown protein
AT5G06380 54 / 1e-09 unknown protein
AT2G27180 53 / 5e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G200100
[exp]
143 / 8e-44 AT3G11690 / unknown protein
Potri.009G151600
[exp]
52 / 1e-08 AT2G27180 54 / 1e-09 unknown protein
Potri.004G190500
[exp]
48 / 4e-07 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021243
[exp]
86 / 5e-21 AT3G11690 112 / 6e-30 unknown protein
Lus10016197
[exp]
85 / 1e-20 AT3G11690 107 / 3e-28 unknown protein
Lus10029349
[exp]
84 / 3e-20 AT3G11690 105 / 7e-28 unknown protein
Lus10013608
[exp]
83 / 1e-19 AT3G11690 109 / 5e-29 unknown protein
Lus10008446
[exp]
60 / 2e-11 AT2G27180 91 / 3e-23 unknown protein
Lus10013375
[exp]
55 / 1e-09 AT2G27180 96 / 3e-25 unknown protein
PFAM info
Representative CDS sequence
>Potri.016G066300.2 pacid=42809701 polypeptide=Potri.016G066300.2.p locus=Potri.016G066300 ID=Potri.016G066300.2.v4.1 annot-version=v4.1
ATGCCATTCGCATCTTCTTCATCATTGATAAAGCGCCGGCCCCTTTTAAGACACGCCAACTCCTCGGGTTCCTCCTGCTGCAGCGGGCGTTTTGGTGAGA
TAGCGGGGGGGACAACAGCAGAGTGTGCAGCGATTTGTTGTTGTTGTCCATGTGGATTAGTTAACCTTTTGGTTCTCACTATCTACAAGATTCCTGCCGG
AATATGTCGACGTGCTTTGAAAAGAAAACAACGGAAAAAACTGATCAAGAAAGGCCTTTTTCCCCCGCGAGGGAGGGGTTATGGCTGTGGATCATGCGAT
GATCCGGAATTACATATTCATCCAATGGCTCGTGTTGAGGATTCATTGCGAGAGTTCGATGGTGAGGAGGCTGTGAAGAAGGAGGAAGCTATGCTGAGGT
TGGAGAAGGAGATGTGGGAGACCTTCTACGGTACTGGGTTCTGGAGAAGTCCTTCACAAAGAGAATTACCAGCTAAGAGGAGTTCTCCAAGAGAGACACC
CAACGCTAGACTCTAA
AA sequence
>Potri.016G066300.2 pacid=42809701 polypeptide=Potri.016G066300.2.p locus=Potri.016G066300 ID=Potri.016G066300.2.v4.1 annot-version=v4.1
MPFASSSSLIKRRPLLRHANSSGSSCCSGRFGEIAGGTTAECAAICCCCPCGLVNLLVLTIYKIPAGICRRALKRKQRKKLIKKGLFPPRGRGYGCGSCD
DPELHIHPMARVEDSLREFDGEEAVKKEEAMLRLEKEMWETFYGTGFWRSPSQRELPAKRSSPRETPNARL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G11690 unknown protein Potri.016G066300
[exp]
0 1
AT5G03960 IQD12 IQ-domain 12 (.1) Potri.006G046000
[exp]
5.29 0.6774
AT1G72680 ATCAD1 CINNAMYL ALCOHOL DEHYDROGENASE... Potri.006G024250
[exp]
10.00 0.6964
AT1G69780 HD ATHB13 Homeobox-leucine zipper protei... Potri.010G093400
[exp]
11.74 0.7344 ATHB13.3
AT5G47800 Phototropic-responsive NPH3 fa... Potri.016G003700
[exp]
13.34 0.7084
AT2G32010 CVL1 CVP2 like 1 (.1.2) Potri.008G155700
[exp]
22.51 0.7018
AT5G63390 O-fucosyltransferase family pr... Potri.012G095166
[exp]
34.89 0.6444
AT4G02680 EOL1 ETO1-like 1 (.1) Potri.002G048300
[exp]
36.44 0.6420
AT5G37020 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) Potri.004G078200
[exp]
47.94 0.6499
AT4G08150 HD BP1, KNAT1 BREVIPEDICELLUS 1, BREVIPEDICE... Potri.002G113300
[exp]
48.06 0.6109 KNAT1.1
AT2G04160 AIR3 AUXIN-INDUCED IN ROOT CULTURES... Potri.007G102100
[exp]
61.96 0.6123

Potri.016G066300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.