Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22000 387 / 2e-133 RHF2A, CIC7E11 RING-H2 group F2A (.1.2.3) AT4G14220 154 / 4e-43 RHF1A RING-H2 group F1A (.1) AT5G15790 62 / 1e-10 RING/U-box superfamily protein (.1.2) AT4G00335 61 / 1e-10 RHB1A RING-H2 finger B1A (.1.2.3) AT3G02290 60 / 3e-10 RING/U-box superfamily protein (.1.2) AT4G23450 58 / 5e-10 AIRP1, AtAIRP1 ABA Insensitive RING Protein 1, RING/U-box superfamily protein (.1.2.3) AT5G41350 58 / 2e-09 RING/U-box superfamily protein (.1) AT5G38895 57 / 5e-09 RING/U-box superfamily protein (.1.2.3) AT3G58720 55 / 2e-08 RING/U-box superfamily protein (.1.2) AT1G72310 55 / 3e-08 ATL3 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G200200 [exp] 629 / 0 AT5G22000 385 / 9e-133 RING-H2 group F2A (.1.2.3) Potri.001G213800 [exp] 429 / 8e-150 AT5G22000 385 / 1e-132 RING-H2 group F2A (.1.2.3) Potri.008G149300 [exp] 166 / 2e-47 AT5G22000 186 / 4e-55 RING-H2 group F2A (.1.2.3) Potri.010G092300 [exp] 154 / 6e-43 AT4G14220 248 / 6e-79 RING-H2 group F1A (.1) Potri.001G101700 [exp] 66 / 2e-12 AT5G41350 142 / 2e-42 RING/U-box superfamily protein (.1) Potri.014G087000 [exp] 66 / 4e-12 AT4G00335 222 / 2e-73 RING-H2 finger B1A (.1.2.3) Potri.010G140300 [exp] 60 / 3e-10 AT5G38895 129 / 4e-37 RING/U-box superfamily protein (.1.2.3) Potri.001G068700 [exp] 59 / 6e-10 AT5G38895 161 / 1e-49 RING/U-box superfamily protein (.1.2.3) Potri.003G129900 [exp] 59 / 6e-10 AT5G41350 146 / 6e-44 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013606 [exp] 398 / 4e-138 AT5G22000 337 / 4e-114 RING-H2 group F2A (.1.2.3) Lus10021245 [exp] 395 / 4e-136 AT5G22000 336 / 2e-113 RING-H2 group F2A (.1.2.3) Lus10008447 [exp] 392 / 9e-135 AT5G22000 397 / 4e-137 RING-H2 group F2A (.1.2.3) Lus10013374 [exp] 387 / 1e-132 AT5G22000 397 / 7e-137 RING-H2 group F2A (.1.2.3) Lus10029351 [exp] 290 / 3e-96 AT5G22000 270 / 7e-89 RING-H2 group F2A (.1.2.3) Lus10016195 [exp] 282 / 3e-93 AT5G22000 276 / 2e-91 RING-H2 group F2A (.1.2.3) Lus10010513 [exp] 166 / 3e-47 AT4G14220 236 / 3e-74 RING-H2 group F1A (.1) Lus10034049 [exp] 159 / 1e-44 AT4G14220 228 / 2e-71 RING-H2 group F1A (.1) Lus10017788 [exp] 67 / 9e-13 AT4G00335 204 / 3e-67 RING-H2 finger B1A (.1.2.3) Lus10024635 [exp] 66 / 2e-12 AT5G41350 178 / 7e-57 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.016G066400.5 pacid=42810168 polypeptide=Potri.016G066400.5.p locus=Potri.016G066400 ID=Potri.016G066400.5.v4.1 annot-version=v4.1 ATGGAGGTTCTGGAGATGGATGAAGCAAAGAAACCTGAAGTTCATATGACATCAGCTGCGGCATTTGTGGAGGGGGGAATCCAGGACTCATGTGATGATG CTTGCAGCATTTGCCTCGAAGAGTTTTGTGAAAGTGATCCCTCAACGGTGACTAATTGCAAGCATGAGTTCCATCTTCAGTGCATCCTTGAATGGTGTCA GAGAAGCTCTGAGTGTCCCATGTGTTTGCAATCCATTAGTCTTAAAGATCCCACCAGTCAAGAATTGTTTGAGGCTGTAGAACGGGAGAGGAAAATCAGG GCTGCTCCTTCGAGAAATGCTACTATTTTTCATCATCCTACACTTGGGGATTTCGAGTTGCAGCATCTACCAGTTGGTGTAAGTGATTCTGAACTTGAGG AGCGTATAATCCAGCACCTGGCTGCTGCTGCTGCTATGGGAAGGACCCGCCACTTTGGTAGGAGGGAAGGGCAGAGAAACAGGACATCTTCCCATGGCCG TCCACACTTCTTGGTATTTTCTACTCATCCTGGTGCACAGCCTTCTGGTCATGTTTCTTCCTCTTTGACTCAGCTAGGCGGGGAAAATGAACCAGCTCCA GTCTCTGTAGCTAGTCCATCCACACAGCTCACTTCTGTTGGGGATGAACCACCACAACAAGCCTTACAATCCCCTTCTGTTTTAACTGATCAAAGTTCCT CTGCATCTGGATCCACAGCGATGCCTGCAAATAATCAAGGAGTTTCCTTTAATAATAGGAGCGCATCTAGCCAGTCTTCACTGCCAAATCAAGATAGAGC CGGACCATCAGAATTGCAGTCATTTTCTGAGTCTCTAAAATCTAGGCTTAATGCAGTTTCAATGAGGTACAAAGAGTCAATTTCAAGAAGTACAAGAGGG TGGAAGGAGAGGCTGTTTTCTCGTAACAGTTCAATGTCTGATATCAGCTCTGATGTTCGAAGAGAAGTGAATGCAGGAATTGCAACTGTATCTCGTATGA TGGAGCGCCTTGAAACCAGAGATGACGGTGGAGACAACCAAGTTTCTGTGTCAAATCATTTGACTGATCGCTCGAATGTGGAGAGGAGCAACCAGAATAC TGCTGCGACTCACATAGAGAGCCCATTAAATGAAGGAAGTACACCAGCTGCTTGTGCTGCAAGTTCAGCATCTACTTAA
AA sequence Show only first row Show all	>Potri.016G066400.5 pacid=42810168 polypeptide=Potri.016G066400.5.p locus=Potri.016G066400 ID=Potri.016G066400.5.v4.1 annot-version=v4.1 MEVLEMDEAKKPEVHMTSAAAFVEGGIQDSCDDACSICLEEFCESDPSTVTNCKHEFHLQCILEWCQRSSECPMCLQSISLKDPTSQELFEAVERERKIR AAPSRNATIFHHPTLGDFELQHLPVGVSDSELEERIIQHLAAAAAMGRTRHFGRREGQRNRTSSHGRPHFLVFSTHPGAQPSGHVSSSLTQLGGENEPAP VSVASPSTQLTSVGDEPPQQALQSPSVLTDQSSSASGSTAMPANNQGVSFNNRSASSQSSLPNQDRAGPSELQSFSESLKSRLNAVSMRYKESISRSTRG WKERLFSRNSSMSDISSDVRREVNAGIATVSRMMERLETRDDGGDNQVSVSNHLTDRSNVERSNQNTAATHIESPLNEGSTPAACAASSAST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.016G066400 [exp]	0	1
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.012G096700 [exp]	1.00	0.8979
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Potri.006G032800 [exp]	1.41	0.8919
AT2G45630			D-isomer specific 2-hydroxyaci...		Potri.014G073400 [exp]	3.00	0.8875
AT2G33550	Trihelix		Homeodomain-like superfamily p...		Potri.003G163000 [exp]	4.12	0.8598
AT1G57790			F-box family protein (.1)		Potri.006G212600 [exp]	4.89	0.8722
AT4G26980			RNI-like superfamily protein (...		Potri.011G090700 [exp]	4.89	0.8854
AT3G52950			CBS / octicosapeptide/Phox/Bem...		Potri.005G070500 [exp]	5.29	0.8643
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Potri.002G243700 [exp]	6.32	0.8797	Pt-EU3.1
AT2G12550		NUB1	homolog of human NUB1, ubiquit...		Potri.006G061500 [exp]	6.70	0.8680
AT2G44410			RING/U-box superfamily protein...		Potri.009G023300 [exp]	8.12	0.8752

Compare expression of checked genes

Potri.016G066400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.