Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06440 372 / 1e-120 unknown protein AT3G11720 308 / 4e-95 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G201000 [exp] 671 / 0 AT5G06440 390 / 6e-129 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029362 [exp] 436 / 6e-147 AT5G06440 348 / 3e-117 unknown protein Lus10021251 [exp] 436 / 9e-143 AT5G06440 372 / 3e-122 unknown protein Lus10013601 [exp] 428 / 1e-139 AT5G06440 370 / 2e-121 unknown protein Lus10029361 [exp] 391 / 9e-127 AT5G06440 331 / 8e-108 unknown protein Lus10016186 [exp] 368 / 3e-118 AT5G06440 306 / 1e-98 unknown protein Lus10016185 [exp] 173 / 7e-49 AT3G11720 136 / 1e-37 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G067000.3 pacid=42809927 polypeptide=Potri.016G067000.3.p locus=Potri.016G067000 ID=Potri.016G067000.3.v4.1 annot-version=v4.1 ATGGGGAAGAGTGGAAAGATCTCTCAATTCAGAGAGAGGCTGGACAAGACCCTGGCATCCCCGGAGTTGACAAATCTTGATGCACTTAAAACCCTTATCA GGAATCAACTTGCACGCTCTTCACCTGGTGAAACTGAAGGATTCAGCGACAATTTAATAGAAAACAGGACTAATCATGTGTCCTCTTTTCTTGACATGTT GAGGAGTGCTTCTGTAAGTGAAAGTGAGGTGTCAAGAAATAGTGAGACATCACATGGTGAATGGAAAGTAAAAGAGGATCATGAAGAGTTCCGTGTTATG TATCGCCCAGGACCTCAGGGTACTCCCTTTCATTCATTACTTGTCGAAGGCTATGTTGATGGCACCGTCGATACTTGTTTATGCATCTCTTGGGAGGCAA CACTCTACAGAAAATGGTGGCCTCAGTATAGTTTCCCGCCATTTAGAATCACCATTTGTGAATGTTTGCAAAGGATCCGGATCGGTGAACAGATATCTTT AGTGAGGGTGAAGGTTACATGGCCGCTGACAGCCAGGGAGACTGTTGTGCACTATGTGTTGTTTGAATACCTCCAAGATGGTCTGGTTGTTGTTGTCGCT AGCACGATCTCAGATTTGGAGGGCATTGATAAAACTACCCATGGGTTTTCAAAAGATGGAATCCCTGAAGCAAAGGACGTGGTAAGGATTGATGTGATGG GTGGCTTTGCCATACAAAAAGTTACTTCAGAAAGAAGTTATTTTCGGACTATTGCAAATATGGATTTGAAGCTGGATTTTGTCCGTCCATCCCTCATTAA CTTTATCTCAAGGCAGCTCGTCGGCAATGGTTTCAGACTTTATCAGAAGGCAGTGGCTTCAGTGTCTAACTATGATGAAGATTACAGCAAGGCTTTGAAA GATCCAATGTATGCTCGAATACGTGAGGCTCTTTATTCTACTGAAAATGCTGATGTGGTTGTGGAAGAGAAAGTGTATAACAGTGATGCTTCCATTCTAC GGAAAGAGCATTCTAGTGAAGATGTGGAAGGAAACTTGGGAGATGTTGAACTGAATATTCATGGGGATAATGATGCAATCAAAGATTTTTCAGAGAATGC AGAAGTTGTAGTAAACAAATCCTTTAGTGAGATTGAGGAAGAAAATAATGAAGAAAGTAGGGGCTTGAAGGGTGAAAACTTGGGAGGTTTGGAACTGAAT AATGCAAGCAAAGCTTTTCCTTGTGGTGCACCACTTATGGACAGCAAATCCTTCGGTGAGATCAAGGAAGATAATGATCCAGAAAGTAGGCACTCGGTTG TGGAAGGGAAAGTGTATAACAGTGATGCTTCCCTTCTACAGAAAGAGCATTCTACTGAAGATGTGGAAGAAAACTTGGGAGATGTTGAACTGAATATTCA TGGGGATAATGATGCAATTGAAGGTTTTTCAGAGAATGCAGAAGTTGTAGTAAACAAATCCTTTAGTGAGATTGAGGAAGAAAATAATGAAGAGAGTAGG GGCTTTAAGGATGAAAACTTGGGAGGTTTGGAACTGAATGCTGCAAGCAAAGCTTTTCCTTGTAGTGCACCACTTATGGACAGCAAATCCTTTGGTGAGA TCAAGGAAGAAAATGATCCAGAAAGTAGGCACTTGAAGGATAGAATGAGGGGGGAGGAACAGAGAGTTCATTGCAAGGACCATGGAAGTGCAAGTTTGCA AAACATTGCACTGGCTACAGATAGGAAAACTTTTATTGGGATTGAAGAAGAAAAAAATGAAAATAGCAGACATTCAACGAGGGATTGCAGAGTTATAGGT CAACCTTCAAGCAATAAAATTGCTCTAAAAAGCCCTGAAAACTGTACAAGGAATATGCGTATCAGTTCTGATGTAGGGAGAGCCTTAGAAACTCTAGAGA AGGCCATTTCTGTGGTCCGGGAATATAGTAGTTCTCTAACCAGGTCTTCTTCTAGCAAAACAAATGAAGAAACTCCAAATCTTGACAAGGACGTTGAAAT CGATCCAACTCATTTAGAAGACAGTGGAGTCTGTCCGAAAGCTGGGGTCTCTGCTGAAGTATCTGCTGAAGTATCTGATAAAGGAAGACCTGTAGAGAGG AATTCACATGAATCCAGGAATAGCTCCAGCAATCTTGACATCAGCCGCGCAGGCTCAAGGGAAATAAACCATAACAAGATAACACCGGAATCACCAGACC AATATATTTCAGTTCCTAATGAGACTAACCATGTTCCTTTATATTCTTCTCAAAGTCAGAAAGATGGAACAGCAGAGGTACAAACAATGGACATAACCGC GCAAGGCAACAAGCAAACGAGCCTTGAGGCAAATGGCATCCATGAAAATGTTTTTCATGAAGGGAAGAAGTCTACTCGGCAAAAAAGTTATAGGTACTGC TGTTGTGGTTCCAGATATGAATAG
AA sequence Show only first row Show all	>Potri.016G067000.3 pacid=42809927 polypeptide=Potri.016G067000.3.p locus=Potri.016G067000 ID=Potri.016G067000.3.v4.1 annot-version=v4.1 MGKSGKISQFRERLDKTLASPELTNLDALKTLIRNQLARSSPGETEGFSDNLIENRTNHVSSFLDMLRSASVSESEVSRNSETSHGEWKVKEDHEEFRVM YRPGPQGTPFHSLLVEGYVDGTVDTCLCISWEATLYRKWWPQYSFPPFRITICECLQRIRIGEQISLVRVKVTWPLTARETVVHYVLFEYLQDGLVVVVA STISDLEGIDKTTHGFSKDGIPEAKDVVRIDVMGGFAIQKVTSERSYFRTIANMDLKLDFVRPSLINFISRQLVGNGFRLYQKAVASVSNYDEDYSKALK DPMYARIREALYSTENADVVVEEKVYNSDASILRKEHSSEDVEGNLGDVELNIHGDNDAIKDFSENAEVVVNKSFSEIEEENNEESRGLKGENLGGLELN NASKAFPCGAPLMDSKSFGEIKEDNDPESRHSVVEGKVYNSDASLLQKEHSTEDVEENLGDVELNIHGDNDAIEGFSENAEVVVNKSFSEIEEENNEESR GFKDENLGGLELNAASKAFPCSAPLMDSKSFGEIKEENDPESRHLKDRMRGEEQRVHCKDHGSASLQNIALATDRKTFIGIEEEKNENSRHSTRDCRVIG QPSSNKIALKSPENCTRNMRISSDVGRALETLEKAISVVREYSSSLTRSSSSKTNEETPNLDKDVEIDPTHLEDSGVCPKAGVSAEVSAEVSDKGRPVER NSHESRNSSSNLDISRAGSREINHNKITPESPDQYISVPNETNHVPLYSSQSQKDGTAEVQTMDITAQGNKQTSLEANGIHENVFHEGKKSTRQKSYRYC CCGSRYE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06440			unknown protein		Potri.016G067000 [exp]	0	1
AT1G32360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.001G140800 [exp]	3.46	0.6843
AT1G07990			SIT4 phosphatase-associated fa...		Potri.004G211500 [exp]	5.91	0.6746
AT4G19670			RING/U-box superfamily protein...		Potri.015G117600 [exp]	14.69	0.6744
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Potri.005G129500 [exp]	29.29	0.6336
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.009G131200 [exp]	31.46	0.6789
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Potri.010G213300 [exp]	37.28	0.6796
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Potri.016G091700 [exp]	45.60	0.5915	Pt-TKI1.1
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Potri.008G182500 [exp]	54.08	0.6520
AT1G07470			Transcription factor IIA, alph...		Potri.009G036700 [exp]	62.44	0.5833
AT1G71080			RNA polymerase II transcriptio...		Potri.010G114900 [exp]	62.86	0.5725

Compare expression of checked genes

Potri.016G067000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.