Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28360 296 / 3e-101 Ribosomal protein L22p/L17e family protein (.1) AT1G52370 288 / 4e-98 Ribosomal protein L22p/L17e family protein (.1.2.3) ATCG00810 54 / 7e-09 ATCG00810.1, RPL22 ribosomal protein L22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006865 [exp] 318 / 1e-109 AT4G28360 314 / 2e-108 Ribosomal protein L22p/L17e family protein (.1) Lus10037603 [exp] 261 / 8e-88 AT4G28360 272 / 1e-92 Ribosomal protein L22p/L17e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00237 [poplar] [flax] Ribosomal_L22 Ribosomal protein L22p/L17e
Representative CDS sequence Show only first row Show all	>Potri.016G067100.1 pacid=42809461 polypeptide=Potri.016G067100.1.p locus=Potri.016G067100 ID=Potri.016G067100.1.v4.1 annot-version=v4.1 ATGGTGGGTTGGCAAAGACATCTACAGTCTTTGATTCGTCAAGTTGGAAGAAGAAGTGCAGAGCACAATCACATTGCCCATTTTTCTACTACTACCACCA CTACATCTCGCTTGGATTCTTCTCTTTTACATGGTGAGTTGTCTTATCTACCGAGGTTGTGGAAATTGCCTTCTGCTAATGTTTCGACAAGGCCTTTTTA TCAGTTCTTGCAACAGGCGGGCATTTCCAATTCAAGGAAACTACTAGCAGATTCTTCAGAGGAGCAACCTGTTTCATCTCCATTCACTCCTATGCTAGCA TTAGAGAGTGGAAAAACTGAACAAAAGGCAGTCTCTAAACCTGAAAAGGTTCAAGCAGTGTTAAAGGGCATAAAAATGAGTCCTAAGAAGCTCAACTTGG TTGCTGCATTAGTTCGTGGCATGCGCGTTGAAGATGCACTATTGCAATTGCAAGTGACAGTAAAGCGAGCTGCAAAAACCGTCTTCCAGGTTATTCATTC AGCTCGAGCAAATGCAACTCATAATCATGGGTTAGATCCAGATCGTCTCCTTGTTGCTGAAGCATTTGTTGGAAAGGGATTTTTTAAGAAAAGAATTTCC TACCATGCTAAAGGAAAATGTGGAATTAGAGAGAGGCCCGAGAGTCGACTGACAGTAGTAGTAAGGGAGACAACCCCCGAGGAGGAGGCTAAGATCGCCA AGCTAAGAGTCCACAATTTCCGCAAGCTCACTAAGAAGGAAAGGCAGCTGGTACCACATAAGCTTATTGAGACCACGTCAATATGGAACCGCAAAGGCAA AGCTGCTGATCGACAACCAAGTGGTGTGGCTGCATGA
AA sequence Show only first row Show all	>Potri.016G067100.1 pacid=42809461 polypeptide=Potri.016G067100.1.p locus=Potri.016G067100 ID=Potri.016G067100.1.v4.1 annot-version=v4.1 MVGWQRHLQSLIRQVGRRSAEHNHIAHFSTTTTTTSRLDSSLLHGELSYLPRLWKLPSANVSTRPFYQFLQQAGISNSRKLLADSSEEQPVSSPFTPMLA LESGKTEQKAVSKPEKVQAVLKGIKMSPKKLNLVAALVRGMRVEDALLQLQVTVKRAAKTVFQVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRIS YHAKGKCGIRERPESRLTVVVRETTPEEEAKIAKLRVHNFRKLTKKERQLVPHKLIETTSIWNRKGKAADRQPSGVAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28360			Ribosomal protein L22p/L17e fa...		Potri.016G067100 [exp]	0	1
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Potri.001G364500 [exp]	3.74	0.8971
AT5G23200			unknown protein		Potri.005G092000 [exp]	5.19	0.8900
AT5G39740		OLI7, RPL5B	OLIGOCELLULA 7, ribosomal prot...		Potri.019G099000 [exp]	7.41	0.9341
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Potri.008G204000 [exp]	10.24	0.8945	Pt-ECR1.1
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Potri.003G102800 [exp]	14.76	0.9173	ATBBC1.3
AT3G16080			Zinc-binding ribosomal protein...		Potri.003G053100 [exp]	17.49	0.9102	RPL37.2
AT1G29630			5'-3' exonuclease family prote...		Potri.011G077001 [exp]	19.89	0.8999
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Potri.012G128600 [exp]	21.07	0.9083	Pt-RPS13.2
AT1G73230			Nascent polypeptide-associated...		Potri.012G037900 [exp]	22.13	0.9065
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Potri.002G056200 [exp]	23.21	0.9040	Pt-RPS12.2

Compare expression of checked genes

Potri.016G067100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.