Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10590 238 / 1e-70 UBP10 ubiquitin-specific protease 10 (.1.2) AT4G10570 237 / 6e-70 UBP9 ubiquitin-specific protease 9 (.1) AT5G22030 216 / 2e-62 UBP8 ubiquitin-specific protease 8 (.1.2) AT1G32850 142 / 2e-36 UBP11 ubiquitin-specific protease 11 (.1) AT2G40930 128 / 5e-32 PDE323, ATUBP5, UBP5 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G201100 [exp] 584 / 0 AT5G22030 815 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.001G214800 [exp] 230 / 1e-67 AT5G22030 1086 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.006G033800 [exp] 163 / 1e-43 AT2G40930 1231 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.016G031900 [exp] 158 / 5e-42 AT2G40930 1204 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.001G449000 [exp] 144 / 4e-37 AT4G10570 1097 / 0.0 ubiquitin-specific protease 9 (.1) Potri.011G152500 [exp] 138 / 4e-35 AT4G10570 1106 / 0.0 ubiquitin-specific protease 9 (.1) Potri.018G017000 [exp] 48 / 1e-05 AT5G10790 615 / 0.0 ubiquitin-specific protease 22 (.1) Potri.006G266100 [exp] 45 / 6e-05 AT5G10790 628 / 0.0 ubiquitin-specific protease 22 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013369 [exp] 291 / 4e-90 AT5G22030 1065 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10008452 [exp] 279 / 2e-85 AT5G22030 1028 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10013599 [exp] 254 / 6e-76 AT5G22030 811 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10021253 [exp] 252 / 3e-75 AT5G22030 814 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10001661 [exp] 209 / 9e-60 AT4G10570 1032 / 0.0 ubiquitin-specific protease 9 (.1) Lus10017343 [exp] 204 / 4e-58 AT4G10570 1047 / 0.0 ubiquitin-specific protease 9 (.1) Lus10008276 [exp] 157 / 1e-41 AT4G10570 702 / 0.0 ubiquitin-specific protease 9 (.1) Lus10033243 [exp] 156 / 3e-41 AT4G10570 1028 / 0.0 ubiquitin-specific protease 9 (.1) Lus10038994 [exp] 146 / 9e-38 AT2G40930 1188 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10027289 [exp] 145 / 1e-37 AT2G40930 1239 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF00443 [poplar] [flax] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Potri.016G067400.1 pacid=42810010 polypeptide=Potri.016G067400.1.p locus=Potri.016G067400 ID=Potri.016G067400.1.v4.1 annot-version=v4.1 ATGAACAGTGCAATTCAGTGCTTGGCACACTCCCCAAAGCTAGTTGACTGTTTCCTTGGGGACTATAGAAAAGAGATAAATCAGGAAAATCCAATAGGAA CGAAGGGAGAGCTTGCTTTAGCATTTGGGGATTTGTTAAGTAAGCTATGGACACCAGGAAGGACGCCGGTGGCTCCTGCAATATTCAAGCGAAAACTAGC AGATTTTTCTCCTCAATTTATCGGCTACAACCAGCATGATTCTCAAGGTCAGTATCAGTCAACACTGGTTTGCCCTGCTTGCAACAAGAAGTCTGTCACA TATGATCCATTTATGTACTTATCACTGCCGTTACCTTCAACAACAATGCGGACTATGACTTTGACTGTTTTGAGCACTGATGGGAGGAATTTACCATCCC CTATTACTGTAACTGTGCCCAAATGTGGGAGGCTAAAGGATCTCATTGGGGCCTTGAGCATTGCGTGTTCTTCGAGAGATATTGATGAAATGCTGATGGT GGTTGAGATATACAAGAACAAAATTTTTCGTCCCACGACTAAGCCATCTGACTCGGTAGCCTTGATCAGAGACGAAGACAAACTTGTTGCTTATCGGTTA CCAAAAGATAACCAGAATTCACTCTTAGTTGTCTTTATGCACGAAAGAGTGGAAAGGCCTTGTGAATTTGAGAGAGCAATACCAAATTTGAAACTGTTTG GCATTCCGTTTGTAGCAAGGTTAGAGGATCTTTCTACTGGATTTGATCTCCATAAACTGTATCTGAAATTACACAGTCCACTTCTTATGCCTGCTGAAGA TGCATGCGATGACTATGATGATGTGGGGATTACAACTAGTGAAGATTCTACAATGGAGAATGTCCTTAGCCCCACAATCTATACAGGCTTGGACACTGGA ACAGAGGATGACCAGTGTTCCAGTTCTGATTTTCGATTCTATTTGAAAGATGGATTGAGATCAACAGAGATGAAGATGAATGATCCATTACCAGTCCCAA AATTTAACGATGACTTGGAGGTCTATGTAACTTGGTCAGAAAACACGATTGAGAAGTATGATACATGCCTTCTCAACTTGGAGGACTTCCCAATCGATGA TTTTGAACTGTCAACCTACATTTCCCAGAAGGACAGCCAGTTTTCCAATCATTATGTGTTGTATGCAACAAGTAATCATCATGAAGGCATGGGATGTGGT CACTACGATGCATCATGCATTTATTGA
AA sequence Show only first row Show all	>Potri.016G067400.1 pacid=42810010 polypeptide=Potri.016G067400.1.p locus=Potri.016G067400 ID=Potri.016G067400.1.v4.1 annot-version=v4.1 MNSAIQCLAHSPKLVDCFLGDYRKEINQENPIGTKGELALAFGDLLSKLWTPGRTPVAPAIFKRKLADFSPQFIGYNQHDSQGQYQSTLVCPACNKKSVT YDPFMYLSLPLPSTTMRTMTLTVLSTDGRNLPSPITVTVPKCGRLKDLIGALSIACSSRDIDEMLMVVEIYKNKIFRPTTKPSDSVALIRDEDKLVAYRL PKDNQNSLLVVFMHERVERPCEFERAIPNLKLFGIPFVARLEDLSTGFDLHKLYLKLHSPLLMPAEDACDDYDDVGITTSEDSTMENVLSPTIYTGLDTG TEDDQCSSSDFRFYLKDGLRSTEMKMNDPLPVPKFNDDLEVYVTWSENTIEKYDTCLLNLEDFPIDDFELSTYISQKDSQFSNHYVLYATSNHHEGMGCG HYDASCIY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10590		UBP10	ubiquitin-specific protease 10...		Potri.016G067400 [exp]	0	1
					Potri.017G115002 [exp]	3.16	0.9140
AT4G34135		UGT73B2	UDP-glucosyltransferase 73B2 (...		Potri.005G008050 [exp]	3.46	0.9174
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.012G069300 [exp]	9.69	0.8537	ATHVA22.1
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Potri.010G031601 [exp]	10.39	0.9182
					Potri.001G255904 [exp]	10.48	0.9259
AT3G61420			BSD domain (BTF2-like transcri...		Potri.005G061366 [exp]	14.96	0.8963
AT4G15093			catalytic LigB subunit of arom...		Potri.018G145550 [exp]	15.77	0.7616
AT3G62790			NADH-ubiquinone oxidoreductase...		Potri.002G204800 [exp]	22.18	0.8049
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.001G255900 [exp]	24.37	0.9039
AT3G53810			Concanavalin A-like lectin pro...		Potri.009G035400 [exp]	31.41	0.8232

Compare expression of checked genes

Potri.016G067400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.