Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11760 803 / 0 unknown protein AT5G04860 597 / 0 unknown protein AT2G10560 235 / 2e-71 unknown protein AT2G25460 133 / 3e-33 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G201200 [exp] 1330 / 0 AT3G11760 818 / 0.0 unknown protein Potri.010G244100 [exp] 783 / 0 AT3G11760 657 / 0.0 unknown protein Potri.008G015700 [exp] 781 / 0 AT3G11760 665 / 0.0 unknown protein Potri.018G027200 [exp] 309 / 2e-95 AT3G11760 327 / 5e-103 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021254 [exp] 953 / 0 AT3G11760 793 / 0.0 unknown protein Lus10013598 [exp] 910 / 0 AT3G11760 759 / 0.0 unknown protein Lus10016183 [exp] 781 / 0 AT3G11760 771 / 0.0 unknown protein Lus10029364 [exp] 756 / 0 AT3G11760 733 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF10358 [poplar] [flax] NT-C2 N-terminal C2 in EEIG1 and EHBP1 proteins
Representative CDS sequence Show only first row Show all	>Potri.016G067600.1 pacid=42809530 polypeptide=Potri.016G067600.1.p locus=Potri.016G067600 ID=Potri.016G067600.1.v4.1 annot-version=v4.1 ATGGTGGTGAAGATGATGAGGTGGCGGCCATGGCCACCTTTGATTTCGAAGAAGTATGAGGTGAGGCTTGTTGTGCGAAGGATTGAGGGCTGGGATCGAG TGCGGGAAGCTTTAGCTGCTGCACCTGGGACATCGTCAGGTGGTGACTTGAAGGACAAGTCGGAGAAATTGACGGTGGAGATTAGATGGAAAGGGCCCAA ATTGGCGTTGAGTTCATTGAGGAGGACGGTTGTGAAGAGGGATTTTACGAAAGAAGTGGAGGTTTATGGTGGCGGTGGTGAAGGGGAAAACGGTGGCGTT TTGGTGGAGTGGGATGAGGAGTTTGAGAGTTTATGTACTTTGTCTGCTCATAAAGAAAATGTGTTTCATCCCTGGGAGATCTCTTTCACTGTCTTCAATG GTGTGAACCAAGGGCCGAAGAATAAGGTTCCTGGAGTTGGAACAGCAACGGTGAACCTCGCTGAATTTGCTTCTGCAGCTGAACAGAAGGAGTTTGAGTT AAGACTTCCGCTCATGGTCTCTGCTGGTGTGGCCGAGCCTCGCCCTTTGCTCTGTGTATCACTCAGCTTGTTGGAGTTGAGAACTGCTCATGAGACCTCT GAGTCAGTACAGAGAGCTATAGTACCCATTCCATCTTCACCTCAATCTGGAGAAGCTGTCTCAACTGAAAAGGATGAGCTCTCTGCAATTAAAGCTGGTC TCAGAAAGGTAAAGATTTTTACTGGATATGTATCTACCAGGAGAGCAAAAAAGGCCTGTCGCGAGGAAGAAGGCAGTGAAGGCAGGTGCTCTGTTAGGAG CGAGGATGGTGAGGATAACTATAACTATCCATTTGACTGTGAGTCACTTGATGATTTGGAGGAAGGAGAATTGGATGAGGTCAAGGAGGATTCTACAGTG AGGAAGTCATTCAGTTATGGCACACTGGCTTTTGCAAACTATGCTGGAGGATCTTTTTACCCTAGTGCAAGGATAAATGCTGAAGATGAAGATTGGTTTT ACTACAGCAATCGCAAGTCAGATGTGGGTTGCTCACACAGTGATGATTATACCCCATCAGTCTCTGAGCCATCTCTCTTGCAGAATTCTAAGCGCAGCAT TTTATCATGGCGGAAAAGGAAGTTGAGCTTTAGGTCTCCTAAAGCTAAAGGAGAGCCATTGTTGAAGAAGGCATATGGAGAAGAAGGCGGGGATGATATT GATTTTGATCGCCGGCAGCTTAGCTCTGATGAATCTCTTGCTCTTGGCTGGCATAAGGCAGAGGAGGATGCATATGCAAATCGATCATCAGTATCTGAAT TTGGTGACGACAATTTTGCCATAGGAAGTTGGGAGAGAAAAGAAGTGATAAGCCGTGATGGACAGATGAAGCTTCAAACTGAGGTTTTCTTTGCTTCCAT TGATCAACGAAGTGAGCAGGCTGCAGGTGAGAGTGCTTGTACAGCCCTTGTTGCTATTATTGCTGATTGGTTTCAGAATAACCATGGTCTCATGCCCATT AAGTCCCAATTTGATAGTCTCATCAGAGAAGGGTCCTTGGAATGGAGAAACCTCTGTGAGAATGAAACCTACAGGGAGCGGTTCCCTGACAAACACTTTG ACCTTGAAACAGTTCTCCAAGCCAAAATTCGTTCTATTGCTGTTGTCCCTGGCAAGTCTTTTATCGGTTTTTTCCATCCAGATGGGATGGATGAGGGACG ATTTGACTTTTTGCAAGGAGCCATGTCCTTTGATAACATTTGGGATGAGATAAGCTGTACTGGATTGGAATGTCCGAGTGATGGTGAACCTCAGGTCTAC ATTGTAAGTTGGAACGACCATTTTTTCATCCTAAAGGTTGAACCAGAAGCTTACTACATTATTGACACATTAGGAGAGAGGCTCTATGAGGGATGCAATC AGGCCTACATTTTGAAATTTGACAGCAACACAATTATTCATAAGTTGCCAAATGCTGTGGAATCATCTGATGAGAAAACAATGGGTGATCAGCAGAATGT GCCAGCCGTCTCAGAACCCAAGGATCAGCATCAAGTGAACCTGAAGGAGGAGGCGGCTTCTACACTGGGGGCACTGGTAACCAAGAATGAAGAACCAATT ACAAGTGAGGAACCATTAAAGAGTGAGGAAGAAGGGGAGGTTATGTGCCAAGGAAAGGATTCTTGCAAAGCGTACATAAAGAGTTTCTTGGCTGCAATTC CAATCAGGGAACTGCAGGCAGACATCAAGAAAGGTTTAATGACATCAAAACCTCTTCATCATCGGTTGCAGATCGAATTCCACTACACCCAGTACTGGCA ACCTTTGACTGAAACTCATGCGACAGAAATGTTGATAGCACTACCACATTCAGTCAATGCCTCCATATCAGAGGCTGCTGTTTAG
AA sequence Show only first row Show all	>Potri.016G067600.1 pacid=42809530 polypeptide=Potri.016G067600.1.p locus=Potri.016G067600 ID=Potri.016G067600.1.v4.1 annot-version=v4.1 MVVKMMRWRPWPPLISKKYEVRLVVRRIEGWDRVREALAAAPGTSSGGDLKDKSEKLTVEIRWKGPKLALSSLRRTVVKRDFTKEVEVYGGGGEGENGGV LVEWDEEFESLCTLSAHKENVFHPWEISFTVFNGVNQGPKNKVPGVGTATVNLAEFASAAEQKEFELRLPLMVSAGVAEPRPLLCVSLSLLELRTAHETS ESVQRAIVPIPSSPQSGEAVSTEKDELSAIKAGLRKVKIFTGYVSTRRAKKACREEEGSEGRCSVRSEDGEDNYNYPFDCESLDDLEEGELDEVKEDSTV RKSFSYGTLAFANYAGGSFYPSARINAEDEDWFYYSNRKSDVGCSHSDDYTPSVSEPSLLQNSKRSILSWRKRKLSFRSPKAKGEPLLKKAYGEEGGDDI DFDRRQLSSDESLALGWHKAEEDAYANRSSVSEFGDDNFAIGSWERKEVISRDGQMKLQTEVFFASIDQRSEQAAGESACTALVAIIADWFQNNHGLMPI KSQFDSLIREGSLEWRNLCENETYRERFPDKHFDLETVLQAKIRSIAVVPGKSFIGFFHPDGMDEGRFDFLQGAMSFDNIWDEISCTGLECPSDGEPQVY IVSWNDHFFILKVEPEAYYIIDTLGERLYEGCNQAYILKFDSNTIIHKLPNAVESSDEKTMGDQQNVPAVSEPKDQHQVNLKEEAASTLGALVTKNEEPI TSEEPLKSEEEGEVMCQGKDSCKAYIKSFLAAIPIRELQADIKKGLMTSKPLHHRLQIEFHYTQYWQPLTETHATEMLIALPHSVNASISEAAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11760			unknown protein		Potri.016G067600 [exp]	0	1
AT3G26935			DHHC-type zinc finger family p...		Potri.017G063800 [exp]	1.00	0.8314
AT3G18280			Bifunctional inhibitor/lipid-t...		Potri.012G054300 [exp]	6.00	0.7217
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Potri.001G094700 [exp]	8.83	0.7371
AT3G18280			Bifunctional inhibitor/lipid-t...		Potri.015G044500 [exp]	9.48	0.7055
AT4G33985			Protein of unknown function (D...		Potri.005G138100 [exp]	13.78	0.7013
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Potri.008G155400 [exp]	18.33	0.6793	RHEL901,SDE3.1
AT3G61920			unknown protein		Potri.002G178900 [exp]	18.33	0.7151
AT2G02170			Remorin family protein (.1.2)		Potri.008G144300 [exp]	21.02	0.6750
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Potri.001G116500 [exp]	21.63	0.6941	SMO1.2
AT3G26935			DHHC-type zinc finger family p...		Potri.003G160600 [exp]	21.84	0.7013

Compare expression of checked genes

Potri.016G067600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.