Plant FIBer expression Database

Potri.016G068066 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G201700
[exp]
129 / 7e-36 AT5G48670 120 / 2e-30 AGAMOUS-like 80 (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.016G068066.1 pacid=42809480 polypeptide=Potri.016G068066.1.p locus=Potri.016G068066 ID=Potri.016G068066.1.v4.1 annot-version=v4.1
ATGATAGGATGCAATAATGCTGGAAACAGCTTTGATACTTGGCTGCCTCGTGGCCTAGGATTTAATCCAGGAGGCAACACTAGTGCCGGAAACAATTTTG
ATCTGGGTTTGGCTCAAGGAAATGATACAAGAAGCGATAGTACTGGTGGAAACAACTTTGACCAGTGGCTGCCTCATTTCGAGAACATGGGGGACAACAG
TGCTGCTGTGAATAACGTTCATCCTTGGCTGGCCGCTGGTGGAGATATAGGTGGAGAGAGTTTAGGACTGGGGCTACTTCCTGGAACTCGTTTTTCAGGC
AGCAGTACTGGTGAAAATCCTTTCCATGGGCTGCACGGGAATATGCATCATCTTGGAAATAGTGGAGCTGCAGATAGCATTGATGGAGGAAGCGATTTAG
GGCATCCTGGATTTTTTGGAACTGGTTCAAGCGATCTCAGGCTGCCATTCGATGTTACCAAGAACTGGCTTAATGACAACTTCAATCCTTGA
AA sequence
>Potri.016G068066.1 pacid=42809480 polypeptide=Potri.016G068066.1.p locus=Potri.016G068066 ID=Potri.016G068066.1.v4.1 annot-version=v4.1
MIGCNNAGNSFDTWLPRGLGFNPGGNTSAGNNFDLGLAQGNDTRSDSTGGNNFDQWLPHFENMGDNSAAVNNVHPWLAAGGDIGGESLGLGLLPGTRFSG
SSTGENPFHGLHGNMHHLGNSGAADSIDGGSDLGHPGFFGTGSSDLRLPFDVTKNWLNDNFNP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.016G068066
[exp]
0 1
Potri.002G192050
[exp]
1.00 0.9956
Potri.015G120700
[exp]
8.48 0.9895
AT5G23960 ATTPS21 terpene synthase 21 (.1.2) Potri.015G085500
[exp]
15.00 0.9915 Pt-TPS1.3
Potri.004G009900
[exp]
18.22 0.9912
AT3G48770 DNA binding;ATP binding (.1) Potri.015G102301
[exp]
18.65 0.9822
AT5G08640 ATFLS1, FLS flavonol synthase 1 (.1.2) Potri.019G014454
[exp]
20.73 0.9912
AT1G29670 GDSL-like Lipase/Acylhydrolase... Potri.019G008404
[exp]
22.31 0.9911
AT5G33370 GDSL-like Lipase/Acylhydrolase... Potri.013G051100
[exp]
23.51 0.9909
AT2G28790 Pathogenesis-related thaumatin... Potri.001G237600
[exp]
24.37 0.9786
AT1G29670 GDSL-like Lipase/Acylhydrolase... Potri.019G008906
[exp]
26.07 0.9908

Potri.016G068066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.