Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52390 566 / 0 TatD related DNase (.1.2) AT3G03500 61 / 2e-10 TatD related DNase (.1) AT5G17570 55 / 2e-08 TatD related DNase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G073800 [exp] 63 / 4e-11 AT5G17570 456 / 5e-163 TatD related DNase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013590 [exp] 526 / 0 AT3G52390 524 / 0.0 TatD related DNase (.1.2) Lus10021262 [exp] 524 / 0 AT3G52390 521 / 0.0 TatD related DNase (.1.2) Lus10021077 [exp] 59 / 2e-09 AT5G17570 447 / 3e-159 TatD related DNase (.1) Lus10017234 [exp] 47 / 1e-05 AT5G17570 397 / 7e-140 TatD related DNase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [poplar] [flax] Amidohydrolase PF01026 [poplar] [flax] TatD_DNase TatD related DNase
Representative CDS sequence Show only first row Show all	>Potri.016G068400.6 pacid=42809150 polypeptide=Potri.016G068400.6.p locus=Potri.016G068400 ID=Potri.016G068400.6.v4.1 annot-version=v4.1 ATGGCAACCATACGAATGATAGATATAGCTGTGAACTTCACAGATGGAATGTTCAAAGGAATCTACAATGGGAAGCAGTACCATGTAGCTGATATAGCCA ATGTGTTGAGCAGGGCTTGGAACGCTGGTGTAGATCGAATCATTGTGACTGGTGGGTCCCTTGAGGAATCGAAGGAAGCTCTTGCCATTTCCGAGACTGA TGGAAGGCTTTTTTGTACGGTTGGAGTCCACCCAACAAGGTGTAAGGAGTTTGAAGAGAGTGGGGATCCAGAAAAGCATTTTCAGGCTCTCTTGTCATTG GCCAAAGAGGGAATGCAAAAAGGAAAGGTGGTGGCTATTGGTGAGTGTGGACTGGATTATGACAGGCTTCATTTTTGCCCACCAGATATTCAAAAGAAGT ACTTTGAGAAGCAGTTTGAATTAGCACATGCCACAAAGCTACCAATGTTTCTACATATGCGTGCGGCTGCGGCAGATTTCTGTGAAATTGTAGAACGTAA CAAAGAAAGATTCAGTGGTGGGGTCACTCATTCATTTACTGGTAGTGCAGAAGATTGCGGAAAACTTCTTTCATTTAATAATATGTATATAGGTGTAAAT GGTTGCTCTCTGAAAACTCCTGAGAATCTTGATGTTGTGAGCGGTATCCCTGTTGAGAAAATGATGATTGAAACGGATTCTCCATATTGTGAAATCAAGA ATAGTCATGCTGGGATTAAGTTTGTAAAATCTACTTGGCCTTCTAAGAAGAAAGAGAAGCATGAGCAGGATTGCATTGTCAAAGGTCGTAATGAGCCTTG TTTAGTTCGGCAAGTTCTTGAGGTTGTGGCTGGATGCAAAGGCATCACTGAAATAGAACAAATGAGCAGGACCATTTACCACAACACCTGCAGGGTTTTC TTTCCCCAAGATTTGGATTCTGCTGCAGATGCTCTTCTTTCAGGTCATCTTGATTCTCAATGA
AA sequence Show only first row Show all	>Potri.016G068400.6 pacid=42809150 polypeptide=Potri.016G068400.6.p locus=Potri.016G068400 ID=Potri.016G068400.6.v4.1 annot-version=v4.1 MATIRMIDIAVNFTDGMFKGIYNGKQYHVADIANVLSRAWNAGVDRIIVTGGSLEESKEALAISETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSL AKEGMQKGKVVAIGECGLDYDRLHFCPPDIQKKYFEKQFELAHATKLPMFLHMRAAAADFCEIVERNKERFSGGVTHSFTGSAEDCGKLLSFNNMYIGVN GCSLKTPENLDVVSGIPVEKMMIETDSPYCEIKNSHAGIKFVKSTWPSKKKEKHEQDCIVKGRNEPCLVRQVLEVVAGCKGITEIEQMSRTIYHNTCRVF FPQDLDSAADALLSGHLDSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52390			TatD related DNase (.1.2)		Potri.016G068400 [exp]	0	1
AT3G58830			haloacid dehalogenase (HAD) su...		Potri.005G201100 [exp]	1.00	0.8269
AT4G26810			SWIB/MDM2 domain superfamily p...		Potri.015G137600 [exp]	3.46	0.7995
AT1G03330			Small nuclear ribonucleoprotei...		Potri.004G219000 [exp]	4.89	0.7963
AT4G22930		PYR4, DHOASE	DIHYDROOROTASE, pyrimidin 4 (....		Potri.007G139700 [exp]	4.89	0.8227
AT5G62530		ATP5CDH, ALDH12...	ARABIDOPSIS THALIANA DELTA1-PY...		Potri.015G064200 [exp]	6.70	0.7477	FIS1.3
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Potri.013G016800 [exp]	7.48	0.7708	RPT5.2
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Potri.017G027000 [exp]	8.66	0.7333
AT3G04680		CLPS3	CLP-similar protein 3 (.1.2)		Potri.017G077200 [exp]	18.57	0.6888
AT4G39300			unknown protein		Potri.004G154800 [exp]	22.75	0.7483
AT4G38130		ATHDA19, ATHD1,...	ARABIDOPSIS HISTONE DEACETYLAS...		Potri.009G170700 [exp]	36.08	0.7412	HDA902,RPD3.1

Compare expression of checked genes

Potri.016G068400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.