Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31220 251 / 3e-78 bHLH bHLH010 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G31210 243 / 9e-76 bHLH bHLH091 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G06170 231 / 6e-71 bHLH bHLH149 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G31215 72 / 4e-15 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G32640 71 / 7e-13 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G17880 69 / 4e-12 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT2G46510 67 / 1e-11 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT1G72210 66 / 2e-11 bHLH bHLH096 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G26744 65 / 4e-11 bHLH SCRM, ATICE1, ICE1, bHLH116 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) AT5G46760 65 / 5e-11 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G202100 [exp] 655 / 0 AT2G31220 252 / 8e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G023800 [exp] 155 / 3e-44 AT1G06170 125 / 2e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G083500 [exp] 74 / 6e-14 AT4G00870 218 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G176900 [exp] 69 / 2e-12 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.003G147300 [exp] 67 / 1e-11 AT4G00870 209 / 1e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G208600 [exp] 62 / 5e-10 AT4G09820 296 / 2e-92 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G136300 [exp] 61 / 8e-10 AT2G16910 461 / 1e-156 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G054100 [exp] 61 / 9e-10 AT4G09820 317 / 6e-100 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G103600 [exp] 61 / 1e-09 AT5G41315 582 / 0.0 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007101 [exp] 297 / 5e-97 AT2G31220 268 / 8e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10020478 [exp] 296 / 1e-96 AT2G31220 271 / 3e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10000037 [exp] 71 / 1e-13 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030970 [exp] 72 / 3e-13 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000484 [exp] 71 / 6e-13 AT4G17880 562 / 0.0 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004575 [exp] 67 / 1e-11 AT4G17880 445 / 9e-152 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004574 [exp] 67 / 2e-11 AT1G32640 618 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10005999 [exp] 62 / 6e-10 AT1G32640 268 / 3e-85 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10042572 [exp] 58 / 9e-10 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10032542 [exp] 59 / 5e-09 AT3G26744 386 / 6e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.016G068500.1 pacid=42809808 polypeptide=Potri.016G068500.1.p locus=Potri.016G068500 ID=Potri.016G068500.1.v4.1 annot-version=v4.1 ATGTATGTAGAGACAGCTTGCTTTGAACCCAACAACTCCATGGTAGAAGATGTTACTGATGATGGGTTTTGCCATGCTATACCACTCATGGCAGGTAACA GTACCACAAATAGCTTTGAAGAGCATCTCAAACTATCCATGGAAGAGTTTTCCAGTCATTACCCCCAAGAAGAATCTGCTGCTGCTGCCTCCATGGAAGA AATCCAACTTCAACATCACATGGCTTTCAGCAATAACAACACCAACCACCATTTAATGCAACAGTACCCTACTCAACTCCTATCATATGACCACTCCTCC AATTGGGATCCCAATATCATTCAATTCCAAGAGATGCACCAAGTACTTGATCAAAATAGCAGCTTTGATGCTACTGCTAATACACAATCCTCCTTGCCAC CTGATCTTCTTAATCTTTTCAACTTGCCCAGATGCACATCAACATCTACTTTGCTTCCTAATTCATCAATTTCCTTTACAAACCCTGCCCATAAGGCTCC TTTGGGCTTCATGGGGGTGGACAACACATCTGCGCGTTTCGACCCATACACACTTGCTCCACAGCCTCATTTGTTTAGGGAATTGGTTCAGTCTTTACCC CCGCATGGTTATACTTTGCCCACGCCCTTGTTTGGTGGAGGCCAAGGGGATGATCATGTGGATGGACAAAGTGGTGGAGGCCTTAGTTACCAAGATGGGG ATCATGGAGATGGGGTTTTTGAGTTTACTGATGAAATGGCTTGCATTGGTAAGGGAATTAAGAAGACTGGCAAAGTTACTAAGCATTTCGCTACGGAACG CCAAAGGAGAGAACACTTGAATGGAAAGTACACTGCCTTGAGGAACTTGGTTCCAAATCCTTCCAAGAACGATAGGGCATCTGTGGTGGGAGAAGCAATT GATTATATCAAAGAACTTCTTCGGACGGTTCAGGAGCTAAAATTACTAGTGGAGAAGAAGAGATGCGGTCGAGAGAGAAGCAAATGGCGCAAGACTGAAG ACGATGGTGGGGTAGAAGTTCTTGATAATTCTGACATCAAGGTTGAACCAGATCAGTCAGCATACAGTAACGGATCATTAAGAAGTTCTTGGCTTCAGAG GAAGTCCAAGGACACTGAGGTAGATGTCCGCCTAATCGAAGACGAAGTTACAATCAAACTGGTTCAGAGAAAGAGAGTTAATTGCTTGTTATATGTCTCC AAAGTCCTTGACGAGCTTCAGCTTGATCTCCACCATGCTGCTGGTGGCCTCATCGGTGATTACTACAGCTTTCTGTTCAACACCAAGATAAATGAAGGAT CATGTGTTTATGCTAGTGCCATAGCCAACAGACTGATTGAGGTTGTGGACAGGCAGTATGCATCCAGTACTACTACTGTACCAGCTGCAGGCAGTTGTTA TTAG
AA sequence Show only first row Show all	>Potri.016G068500.1 pacid=42809808 polypeptide=Potri.016G068500.1.p locus=Potri.016G068500 ID=Potri.016G068500.1.v4.1 annot-version=v4.1 MYVETACFEPNNSMVEDVTDDGFCHAIPLMAGNSTTNSFEEHLKLSMEEFSSHYPQEESAAAASMEEIQLQHHMAFSNNNTNHHLMQQYPTQLLSYDHSS NWDPNIIQFQEMHQVLDQNSSFDATANTQSSLPPDLLNLFNLPRCTSTSTLLPNSSISFTNPAHKAPLGFMGVDNTSARFDPYTLAPQPHLFRELVQSLP PHGYTLPTPLFGGGQGDDHVDGQSGGGLSYQDGDHGDGVFEFTDEMACIGKGIKKTGKVTKHFATERQRREHLNGKYTALRNLVPNPSKNDRASVVGEAI DYIKELLRTVQELKLLVEKKRCGRERSKWRKTEDDGGVEVLDNSDIKVEPDQSAYSNGSLRSSWLQRKSKDTEVDVRLIEDEVTIKLVQRKRVNCLLYVS KVLDELQLDLHHAAGGLIGDYYSFLFNTKINEGSCVYASAIANRLIEVVDRQYASSTTTVPAAGSCY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31220	bHLH	bHLH010	basic helix-loop-helix (bHLH) ...		Potri.016G068500 [exp]	0	1
AT4G23200		CRK12	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111800 [exp]	8.48	0.9295
AT5G53110			RING/U-box superfamily protein...		Potri.003G139900 [exp]	15.23	0.9186
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Potri.019G091300 [exp]	15.77	0.9175
AT5G02070			Protein kinase family protein ...		Potri.006G118500 [exp]	17.66	0.9028
AT5G53190		SWEET3, AtSWEET...	Nodulin MtN3 family protein (....		Potri.012G031400 [exp]	18.97	0.8805
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Potri.002G161600 [exp]	19.39	0.9068
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G095566 [exp]	22.00	0.9031
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096000 [exp]	25.69	0.8984
AT4G23200		CRK12	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111700 [exp]	26.75	0.9112
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G095900 [exp]	28.63	0.8930

Compare expression of checked genes

Potri.016G068500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.