Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33270 607 / 0 AtCDC20.1, CDC20.1 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) AT4G33260 598 / 0 AtCDC20.2, CDC20.2 cell division cycle 20.2, Transducin family protein / WD-40 repeat family protein (.1.2) AT5G26900 528 / 0 AtCDC20.4 cell division cycle 20.4, Transducin family protein / WD-40 repeat family protein (.1) AT5G27570 526 / 0 AtCDC20.5 cell division cycle 20.5, Transducin/WD40 repeat-like superfamily protein (.1) AT5G27080 525 / 0 AtCDC20.3 cell division cycle 20.3, Transducin family protein / WD-40 repeat family protein (.1) AT5G27945 429 / 3e-148 Transducin/WD40 repeat-like superfamily protein (.1) AT4G22910 339 / 2e-112 CCS52A1, FZR2 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) AT5G13840 328 / 3e-108 FZR3 FIZZY-related 3 (.1.2) AT4G11920 321 / 2e-105 FZR1, CCS52A2 FIZZY-RELATED 1, cell cycle switch protein 52 A2 (.1) AT5G52820 71 / 5e-13 WD-40 repeat family protein / notchless protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G048900 [exp] 631 / 0 AT4G33270 766 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.019G021800 [exp] 627 / 0 AT4G33270 767 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.016G118400 [exp] 617 / 0 AT4G33270 771 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.015G110300 [exp] 369 / 2e-124 AT4G33270 363 / 5e-122 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.001G112700 [exp] 332 / 2e-109 AT4G22910 705 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Potri.003G119500 [exp] 329 / 2e-108 AT4G22910 702 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Potri.010G202100 [exp] 325 / 5e-107 AT5G13840 707 / 0.0 FIZZY-related 3 (.1.2) Potri.008G057500 [exp] 319 / 2e-104 AT5G13840 705 / 0.0 FIZZY-related 3 (.1.2) Potri.008G171600 [exp] 77 / 7e-15 AT2G33340 830 / 0.0 MOS4-associated complex 3B (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006853 [exp] 638 / 0 AT4G33270 729 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10006851 [exp] 628 / 0 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10037593 [exp] 621 / 0 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10034687 [exp] 554 / 0 AT4G33270 620 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10042748 [exp] 523 / 7e-179 AT4G33270 592 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10042765 [exp] 475 / 5e-167 AT4G33270 542 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10043009 [exp] 350 / 5e-117 AT4G33270 344 / 1e-114 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10037595 [exp] 334 / 2e-114 AT4G33270 402 / 2e-141 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10040282 [exp] 332 / 2e-106 AT5G13840 685 / 0.0 FIZZY-related 3 (.1.2) Lus10024482 [exp] 322 / 3e-105 AT4G22910 733 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.016G068700.1 pacid=42809542 polypeptide=Potri.016G068700.1.p locus=Potri.016G068700 ID=Potri.016G068700.1.v4.1 annot-version=v4.1 ATGGATTCTTCTTCTTCTTCGACCACAACTAGAATGTTTCATCCTCGAAGCGCACTTCGAGAAAACCCTCAACGGAAAAAATCGTATGAAAACTTGGATC GATTTATACCAAATAGGTCAGCTATGGACATGGATTTTGCGCATTACATGCTCACTGAAGGGAGGAAAGCCAAGGAAAGCCCACCTTCACAATCGCTATA CCAGAAGCTTTTGGCAGAGGCGTTCAATATGAACGGAAGGCGAATTTTAGCCTTCAAGAACAAACCACCCACCCTGGTGGACCCTATCCCGTTGTTTTCA TCATCATCAGTTCATTCTTCTAAACCTGTCAAGCCCCAGCGGCACATTCCTCAGAGACCAGAAATGACATTGGATGCCCCTGACATAGTGGATGATTTCT ACTTGAATTTGTTAGATTGGGGCAACAATAATGTGCTTGCAATAGCTCTTGGGACAACCGTGTATCTTTGGAACGCTTCAAATAGTTCTATCTCAGAAGT AGTCACTGTTGATGAGGAAGATGGTCCTGTCACTAGCATTAGCTGGGCACCTGATGGACGTCACCTTGCTGTAGGCTTGGACAATTCTAATGTCCAGCTA TGGGACTCTGCAACTAATCAAATGCTAAGAACACTCCGAGGAGGTCATCGATTGCGAGTGACGTCACTGGCCTGGAATCATCACTTACTTACAACTGGAG GAAAGGATGCTAAAGTCATCAATAATGATGTGAGAATAAGAGAACACATTGTTGAATCATATGAGGGACACCGACAGGAAGTTTGTGGATTGAAATGGTC AGCTTCAGGCCAGCAATTAGCAAGTGGAGGGAATGATAACCTTCTTTTCATATGGGATAGATTTATGGCCTCTTCAAATTCACCAAGGCATTGGCTTCAC AAGCTCGAGGACCACACAGCAGCTGTGAAAGCCCTTGCTTGGTGTCCCTTTCAGAGCAATCTGCTAGCCTCGGGTGGAGGTGGGAATGATAGGCACATTA AATTTTGGAACACCCAGACTGGCACATGCTTGAACTCAGTGGACACCGGCTCACAGGTTTGCGCTCTTCAGTGGAACAAGCATGAGCGGGAATTGCTTAG CTCTCATGGATTTACAGAGAACCAACTCATTCTATGGAAATATCCATCCATGGTAAAGATGGCAGAGCTCAGTGGTCACACTTCTCCAGTCCTCTTTATG ACTCAGAGCCCAGATGGATACACAGTGGCATCTGCAGCAGGTGATGAAACATTGAGATTTTGGAATGTGTTTGGGAATCCAAAAGCGGCTAAACCTGCAC CAAAGGCAATTGCTGAACCATTTGCTAATGTATCCCACTTCCGCTAA
AA sequence Show only first row Show all	>Potri.016G068700.1 pacid=42809542 polypeptide=Potri.016G068700.1.p locus=Potri.016G068700 ID=Potri.016G068700.1.v4.1 annot-version=v4.1 MDSSSSSTTTRMFHPRSALRENPQRKKSYENLDRFIPNRSAMDMDFAHYMLTEGRKAKESPPSQSLYQKLLAEAFNMNGRRILAFKNKPPTLVDPIPLFS SSSVHSSKPVKPQRHIPQRPEMTLDAPDIVDDFYLNLLDWGNNNVLAIALGTTVYLWNASNSSISEVVTVDEEDGPVTSISWAPDGRHLAVGLDNSNVQL WDSATNQMLRTLRGGHRLRVTSLAWNHHLLTTGGKDAKVINNDVRIREHIVESYEGHRQEVCGLKWSASGQQLASGGNDNLLFIWDRFMASSNSPRHWLH KLEDHTAAVKALAWCPFQSNLLASGGGGNDRHIKFWNTQTGTCLNSVDTGSQVCALQWNKHERELLSSHGFTENQLILWKYPSMVKMAELSGHTSPVLFM TQSPDGYTVASAAGDETLRFWNVFGNPKAAKPAPKAIAEPFANVSHFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Potri.016G068700 [exp]	0	1
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.004G069600 [exp]	5.65	0.9228
AT3G61320			Bestrophin-like protein (.1)		Potri.014G082900 [exp]	7.00	0.9437
AT1G49620		ICN6, ICK5, KRP...	KIP-RELATED PROTEIN 7, Cyclin-...		Potri.009G103600 [exp]	7.87	0.9316	Pt-ICK5.1,7
AT4G12250		GAE5	UDP-D-glucuronate 4-epimerase ...		Potri.003G114600 [exp]	8.12	0.9252
AT1G22160			Protein of unknown function (D...		Potri.002G092900 [exp]	9.79	0.9308
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Potri.002G009000 [exp]	10.00	0.9077	HMGB901,Pt-HMGB3.2
AT5G20700			Protein of unknown function (D...		Potri.006G139200 [exp]	10.95	0.9176
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Potri.013G095500 [exp]	18.33	0.9245
AT1G68140			Protein of unknown function (D...		Potri.001G208800 [exp]	18.70	0.9015
AT2G18940			Tetratricopeptide repeat (TPR)...		Potri.006G166200 [exp]	22.53	0.9280

Compare expression of checked genes

Potri.016G068700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.