Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16280 1531 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021264 [exp] 1685 / 0 AT5G16280 1489 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10013588 [exp] 585 / 0 AT5G16280 533 / 3e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08626 [poplar] [flax] TRAPPC9-Trs120 Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit PF12739 [poplar] [flax] TRAPPC-Trs85 ER-Golgi trafficking TRAPP I complex 85 kDa subunit
Representative CDS sequence Show only first row Show all	>Potri.016G068800.1 pacid=42810092 polypeptide=Potri.016G068800.1.p locus=Potri.016G068800 ID=Potri.016G068800.1.v4.1 annot-version=v4.1 ATGGATCCGGCGAAGACTTCACTTGGTAAAATGCTATTGGAGGAGATCACTCCGGTGGTCATGGTCCTCCGTACACCCCTGGTAGAAGAATCTTGCCTCA AAAACAGCCTCTCCTTCATCGAAATGCTTAGTCCCTTTTGCGACTTCAATAACATCGACGTGCCTGTACGGACTTCGAGTGATCAGCCATACAGGCTACA GAAGTTCAAATTGAGATTATTTTATGAGTCTGATATTAAGCAGCCGGATATCGTAGCGAAGGAGCGATTAAAGCAGGTTATTACTGAGGCAGGAGAGAAG GATAGATCGGATTTGTCCACTGATCCTCTAGATATTAGCAATGTACTTGCAAGCTCCAAATCTGAAATTTCACCATCTTGGTTTGAGATTTTCAATAAAG AGCTTGTACGTACTGTCTCTTTTTCCGAGCACGAGGCTTTTGACCACCCTGTGGCATGTGTTTCAGTTGTTTCTTCAAAGGATGAACAGCCTATCAACAA ATTTGTGGACCTTTTCAACACTAACAAGTTGCCTTCCCTTCTCAATGACGGTGCAATGGACCCAAAGATTTTGAAACATTATGTATTGGTGCATGATAAT AAAGATGGTCCCTCAGAGAAGGCAACTAAAATACTAACAGAGATGAAAAATACGTTTGGCTTTAATGGCTGTCATTTACTTTGCATTAATTCTTCTCAAG ATGAGCAGATAGAACATCAAGATAATCCTTGGGTTCCTTATAAATTTGATTCTTCACCTAGTCAGGATCTTGGTTGTTATCTTAACATTGATGATTTTAA TGAGATAAAGGATTTAATACAAGAATTATCATCTAAACATATCATTCCTTACATGGAGCAGAAAGTTCGTGTGCTCAATCAGCAGATTTCTGCTACAAGG AAAGGCTTTAAAAACCAAATTAAAAACTTATGGTGGAGAAAAGGGAAAGAAGACACACCAGATTCCTCCAATGGACCTATGTATACCTATAGCTCCGTCG AGTCTCAGATCAGAGTTTTGGGTGACTATGCATTCATGTTAGGAGATTATGAACTGGCATTATCAAACTATCGCCTTATTTCCACAGATTATAAGATTGA TAAAGCTTGGAAGCGCTATGCTGGTGTGCAGGAAATGATGGGGCTTACGTACTTTATGTTGGATCAATCAAGAAAAGAAGCAGATAATTGCATGGAAAAT GCTTTTAACACTTATTTAAAACTTGGGTCTTCTGGTCGACAAAATGCTACACGCTGTGGTCTTTGGTGGATAGAAATGTTGAAGATGAAAGATCAATTTA AAGAGGCTGCCACTGTTTACTTTCGCATTTGCAGTGAGGAACTGTTACATTCAGCTGTCATGCTTGAGCAAGCATCTTATTGCTACTTGTTGTCCCAACC ACCTATGTTGCACAAGTATGGGTTTCATCTTGTTCTTTCTGGTGATCGGTATAAAAAATGTGACCAGATTAAACATGCAATTCGTACATATAGAAACGCT GTCTCAGTATATAAGGGAACCCCATGGAGCTACATCAAAGATCATGTTCATTTCCATATCGGCCAGTGTTATGGTTTTCTTGGGATGTATGATGTTGCTT TCACACATATGTTGGAAGTCCTGGCCTGTAGCCATCAGTCCAAGGCAACACAGGAGTTATTCCTCAGAGAATTTCTTCAAATTGTTCAGAAAGCAGGGAA AACATTTGAGGTATTAAGACTTCAGTTGCCTGTTATCAACATCTCATCGCTTAAGGTTGATTTTGAAGACCATCGAACCTATGCATTGCCTGGATCAACT AGTGTTAAAGAAAGTGTCTGGCGTTCATTGGAGGAAGACATGATCCCGTCATTGCCTACTGTCAGGACTAATTGGCTGGAACTACAATCAAAGCTTTTAC CGAAATATAAAGAATCAAACATCTGTGTGGCTGGAGAAGCAATAAAGATCGCTATTGAATTTAAGAACCCCCTGGAAATCCCTATTTCAATCTCTAGTGT TTCTTTGATATGCGAGCTTTCTGCAACATCAGATGAAACGAATTCTGGTGATCACAATTTTAATGTTGACGCAGATGCAAGTTGCTCAACTGCTGGAATC TGGAATAATGAAGAACATGAAAACTTGAGAGAGATAATATCAGACACTTCCTCATTTTCCTTGTCCGAGGTCAACATCTCACTGGGAGGGGGTGAAGCCA ATTTGGTGCAACTAACAGTTACTCCCAAAGTAGAAGGCATTCTAAAAATTGTTGGTGTCAGATGGAAATTGTCAGGTTCTGTGGTTGGTTTTTATAGTTT TGGGTCTAATTATGTGAAAAAGAAAATTGCAAAGGGAAGAAGGAAAGCTAAGCAATCACCCGGCAATTACTTGAAGTTTATAGTGATCCAGAGTCTACCC AAGCTTGAGGGCTTCATTCATGCTCTACCTGAGAAGGCATATGCAGGACATTTACAGAATCTTGTTTTAGAGTTGAGGAACCGATCAGAAGTTTCTGTAA AGAATTTGAAAATGAAGACCAGCCATCCTAGATTCCTAAATATTGGGAAACAAGAAGATTTGGATTTAGAATTTCCTGCATGCTTAGAGAAGAAAACAAA TGTTAGCCCACCTGCTAATCCAAAAATAGCATCTCATGGTGTTTTTCTATTTCCAGAGGATCTCTCAGTGCAAGGGGAAAATCCACTATTGTGGCCTCTT TGGTTTCGGGCTGCTGTTCCTGGAAACATCTCCTTGCAAGTAGTAATATACTATGAGATGGGAGATCAATCAAGTGCCATGAGATACCGAATTCTACGCA TGCATTATAATTTGCAGGTACTACCATCATTGGATGTGTCATTTAAAATCAGTCCCTATCCGTCAAGATTGCAAGAGTTCCTTGTGCACATGGATGTTGT CAACAAAACTAACTCAGAGAGCATCCAGGTTAATCAGCTATCAACCATTGGAAGCCACTGGGAAATTTCTCTGCTTCAACCCATCGATACAATCTTCCCT TCACAATCTCTAATTGCTGGCCAAGCATTTTCATGTTTCTTTGTGCTCAAGAGTTGTAGGAAATCATTAAGTACTGAAGAAAGTACCTCATCTCTTTTCC CTCACATTGGAAGCAATGTAAGTTTGGTTCCTGATGGTAGCAAAGGAGCTCCTTTTGATACATCCAAATCACCTTTGGCTGGTTTCCACGATTATGAAAG GTTGCAGCATGGAATTTCTAATCAGGAAGCTGAAAATGCAGTGGACTTTATTTTGATCTCTCGGCCACTAAAAAGCAATTCTCAGCCTGGAGTTGCAGAC GCACATCATGTCTTTTCTCATCATGCATGTCATTGCAGCACTGCGAGCACAAGTCCAATATCATGGGTAGTTGATGGACCTCGAACCAGACATCACGACT TTTCTTCTTCATTTTGCGAAATAAATTTTAGGATGACTATCTACAACTCATCGAATGCTCTTGCATCTATAATCTTAAAGACCCTTGATTCCACCAGCAT TAGTGATCAGCTGAGTGATGAAGCTTCTGGAAACCAAGTTGGGTGGCATGATGTGTCTCTAGCGAAGGACAGTAAAATCGAATCTGATGCACTCAGAAAC CATGTTCGAAAGTCACTATTACCAGAAAGTGTCTCTCCATTCATCTGGTCTGGGTCAAGCTCAACCGGAGTCCAAATCAAGCCGCTATCCACAACTGAAA TTCCTCTTCAAATATGCGTGTTCTCCCCTGGTACATATGATTTGTCAAACTATGTTTTGAATTGGAATCTTATACCAGTTAACGATCATGAAAGTGTAGG AGAGAGAATACAGTCTTCAGGGACAAGCCTGGGATATCCCTACTACCTTACTGTTCTCCCATCAGATTGA
AA sequence Show only first row Show all	>Potri.016G068800.1 pacid=42810092 polypeptide=Potri.016G068800.1.p locus=Potri.016G068800 ID=Potri.016G068800.1.v4.1 annot-version=v4.1 MDPAKTSLGKMLLEEITPVVMVLRTPLVEESCLKNSLSFIEMLSPFCDFNNIDVPVRTSSDQPYRLQKFKLRLFYESDIKQPDIVAKERLKQVITEAGEK DRSDLSTDPLDISNVLASSKSEISPSWFEIFNKELVRTVSFSEHEAFDHPVACVSVVSSKDEQPINKFVDLFNTNKLPSLLNDGAMDPKILKHYVLVHDN KDGPSEKATKILTEMKNTFGFNGCHLLCINSSQDEQIEHQDNPWVPYKFDSSPSQDLGCYLNIDDFNEIKDLIQELSSKHIIPYMEQKVRVLNQQISATR KGFKNQIKNLWWRKGKEDTPDSSNGPMYTYSSVESQIRVLGDYAFMLGDYELALSNYRLISTDYKIDKAWKRYAGVQEMMGLTYFMLDQSRKEADNCMEN AFNTYLKLGSSGRQNATRCGLWWIEMLKMKDQFKEAATVYFRICSEELLHSAVMLEQASYCYLLSQPPMLHKYGFHLVLSGDRYKKCDQIKHAIRTYRNA VSVYKGTPWSYIKDHVHFHIGQCYGFLGMYDVAFTHMLEVLACSHQSKATQELFLREFLQIVQKAGKTFEVLRLQLPVINISSLKVDFEDHRTYALPGST SVKESVWRSLEEDMIPSLPTVRTNWLELQSKLLPKYKESNICVAGEAIKIAIEFKNPLEIPISISSVSLICELSATSDETNSGDHNFNVDADASCSTAGI WNNEEHENLREIISDTSSFSLSEVNISLGGGEANLVQLTVTPKVEGILKIVGVRWKLSGSVVGFYSFGSNYVKKKIAKGRRKAKQSPGNYLKFIVIQSLP KLEGFIHALPEKAYAGHLQNLVLELRNRSEVSVKNLKMKTSHPRFLNIGKQEDLDLEFPACLEKKTNVSPPANPKIASHGVFLFPEDLSVQGENPLLWPL WFRAAVPGNISLQVVIYYEMGDQSSAMRYRILRMHYNLQVLPSLDVSFKISPYPSRLQEFLVHMDVVNKTNSESIQVNQLSTIGSHWEISLLQPIDTIFP SQSLIAGQAFSCFFVLKSCRKSLSTEESTSSLFPHIGSNVSLVPDGSKGAPFDTSKSPLAGFHDYERLQHGISNQEAENAVDFILISRPLKSNSQPGVAD AHHVFSHHACHCSTASTSPISWVVDGPRTRHHDFSSSFCEINFRMTIYNSSNALASIILKTLDSTSISDQLSDEASGNQVGWHDVSLAKDSKIESDALRN HVRKSLLPESVSPFIWSGSSSTGVQIKPLSTTEIPLQICVFSPGTYDLSNYVLNWNLIPVNDHESVGERIQSSGTSLGYPYYLTVLPSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16280			Tetratricopeptide repeat (TPR)...		Potri.016G068800 [exp]	0	1
AT1G15240			Phox-associated domain;Phox-li...		Potri.001G183100 [exp]	1.00	0.8846
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Potri.018G072600 [exp]	1.41	0.8818
AT5G47490			RGPR-related (.1)		Potri.003G077100 [exp]	1.73	0.8578
AT1G20760			Calcium-binding EF hand family...		Potri.002G008600 [exp]	2.00	0.8384
AT3G55480		AP-3beta, PAT2	beta-subunit of adaptor protei...		Potri.010G202800 [exp]	4.69	0.7688
AT5G23630		PDR2, MIA	PI DEFICIENCY RESPONSE 2, MALE...		Potri.004G137100 [exp]	9.48	0.8108
AT4G01290			unknown protein		Potri.014G089200 [exp]	10.39	0.7625
AT1G63640			P-loop nucleoside triphosphate...		Potri.001G104000 [exp]	11.13	0.7590
AT5G11040		AtTRS120	TRS120 (.1)		Potri.018G022500 [exp]	11.22	0.8175
AT3G17900			unknown protein		Potri.010G033900 [exp]	15.81	0.7340

Compare expression of checked genes

Potri.016G068800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.