Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35920 1474 / 0 RNA helicase family protein (.1) AT5G04895 827 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT1G48650 800 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT2G01130 768 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT1G58060 548 / 5e-174 RNA helicase family protein (.1) AT1G58050 505 / 2e-158 RNA helicase family protein (.1) AT2G30800 336 / 1e-97 ATVT-1, HVT1 helicase in vascular tissue and tapetum (.1) AT1G06670 331 / 7e-95 NIH nuclear DEIH-boxhelicase (.1) AT2G47250 302 / 3e-89 RNA helicase family protein (.1) AT4G18465 291 / 1e-85 RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G246000 [exp] 866 / 0 AT5G04895 1862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.008G014100 [exp] 847 / 0 AT5G04895 1835 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G042500 [exp] 817 / 0 AT1G48650 1629 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Potri.010G117800 [exp] 808 / 0 AT2G01130 1639 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.004G222900 [exp] 550 / 4e-175 AT1G58060 1757 / 0.0 RNA helicase family protein (.1) Potri.005G206500 [exp] 353 / 6e-104 AT2G30800 1374 / 0.0 helicase in vascular tissue and tapetum (.1) Potri.002G192500 [exp] 308 / 3e-91 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.014G117900 [exp] 301 / 8e-89 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.010G057200 [exp] 280 / 2e-81 AT1G27900 1077 / 0.0 RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009022 [exp] 1435 / 0 AT2G35920 1447 / 0.0 RNA helicase family protein (.1) Lus10009660 [exp] 941 / 0 AT2G35920 969 / 0.0 RNA helicase family protein (.1) Lus10034126 [exp] 833 / 0 AT5G04895 1904 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10043459 [exp] 830 / 0 AT5G04895 1897 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009012 [exp] 797 / 0 AT1G48650 1644 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10007938 [exp] 797 / 0 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10013479 [exp] 783 / 0 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009643 [exp] 781 / 0 AT1G48650 1469 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10001415 [exp] 345 / 1e-101 AT2G30800 1276 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10029806 [exp] 332 / 1e-96 AT2G30800 1250 / 0.0 helicase in vascular tissue and tapetum (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF04408 [poplar] [flax] HA2 Helicase associated domain (HA2) CL0021 [poplar] [flax] OB PF07717 [poplar] [flax] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold
Representative CDS sequence Show only first row Show all	>Potri.016G068900.3 pacid=42810682 polypeptide=Potri.016G068900.3.p locus=Potri.016G068900 ID=Potri.016G068900.3.v4.1 annot-version=v4.1 ATGTTTCTAGCTCGTCGCTCACACGGTGCTCCCTCTTTCTTTTCCAAACATCTCTTACTAGCCGCGCCTGCGTTATCTTCAACAACTCTCTCGTACATTC ATCGAGACATCTCAACTCACGCCATGTCACGCCGTCCTAATTTCCAAGGCGGCCGTCGCGGAGGCGGAGGCGTTCCCCGTCGTGGTGGTGATAGAGGACG GGGACGAGGAGGACGTGGAGGAGGACGTGGTGAGCAGCGGTGGTGGGATCCTGTTTGGAGAGCGGAACGATTGAGACAAAAACAGAGTGAGATGGAGGTT CTTGATGAAGATGAATGGTGGAGTAAAATGGAGCAAATGAAGCTTAGAGGGGAGCAAGAAATAATAATGAAGCGTAGTTTTAGCCGCGATGATCAGCAAA AGCTTTCTGATATGGCTTTCGAATTGGGGCTTCACTTCCATGCATACAATAAAGGCAAAACCCTTGTCGTTAGCAAAGTTCCACTACCAGATTATCGAGC TGATCTCGATGAGCAACATGGATCCACACAGAAAGAGATCCAAATGCCTACAGAAATCGAGAGGAGAGTTGGAAATCTTTTGAATAGCTCACAAAAAGCA GCGGCTGGAAATGAGTCCAATGCAACTTCTTCTCAGGGAGGCAAACATGCATCTCTTGGTGGTAAAATAGTGAAACCTGCTTCCATGTTGGAAACAGATG CTGCTAAGGAGAAACAGAGTATTGAACTAAAGCAGAAGCAGGATAAATTAAAGGCTAGTAGCAGCGTGAAGGAAATGCAGTCTTTCAGAGAAAAGCTTCC TGCATTCAAAATGAGAACTGAATTTCTGAAAGCAGTTGCAGAAAATCAGGTATTGGTAATTTCAGGGGAAACAGGTTGTGGTAAAACAACACAGCTTCCT CAGTATATATTGGAGGAGGGAATATCATCTCTACGTGGTGCTCATTACAACATAGTATGCACACAACCCCGCCGTATATCTGCCATTTCTGTTGCTGCAC GAATAGCATCTGAAAGGGGAGAGAGCCTTGGTGAAACTGTTGGTTATCAAATTCGTCTGGAAGCATTACGGTCTGCTCAAACCCGGCTCCTTTTTTGCAC CACTGGTGTGTTACTCCGGAAGCTGGTTCAGGATCCAAATTTAACTGGTGTGAGCCATTTGGCAGTGGATGAAATTCATGAAAGAGGAATGAATGAGGAC TTCCTGTTGATTATTTTGCGCGACCTTCTTCCTCGGCGTCCAGATATGCGTCTTATTCTAATGAGTGCTACCATTAATGCTGACTTGTTCTCTAAATACT TCAGAAATGCCCCAACTATTCATATCCCGGGATTAACTTTCCCTGTATCAGAGTTCTATCTAGAAGATGTGTTGGAGAAAACTCGCTATGAAATTCAAGA GTTGGACAGCTTTCAGGGGAATTCAAGACAAAGAAGAAGAGAGCAATATTCAAAGAAAGATCCTATAACTGAATTATTCGAGGAAGTTGATATTGGTTCT CAATATAAAAATTACAGTGCATCAACAAGACTTTCTCTGGAAGCTTGGTCGGGTTCACAGCTTGACCTGGGTCTGGTGGAGGCAACAATTGAATATATTT GTCGTCATGAACGTGAGGGAGCTGTTCTTGTTTTTCTCACTGGCTGGGATGAGATCTCCAAGCTTCTTGAGCAGATTAAAGGAAACAAACTTCTAGGAGA TCAAAGCAAGTTTCTAGTCCTTCCCCTACATGGTTCAATGCCAACCATAAATCAACGTGAAATTTTTGACCGTCCTCCCCCTAACAAGCGAAAAATTGTT CTGGCAACAAATATTGCAGAGAGCAGTATTACCATAGATGATGTGGTGTATGTTGTAGACTGTGGAAAGGCAAAGGAAACCAGCTATGATGCACTGAACA AGCTGGCTTGTTTGTTACCATCGTGGGTTTCAAAGGCTTCAGCACACCAGAGACGGGGGCGTGCTGGCCGATTGCAACCAGGAGTTTGTTATAGACTGTA TCCAAAAATCATTCATGATTCAATGCTTCAATATCAATTACCAGAAATACTGAGAACACCTTTGCAAGAACTGTGTCTGCATATAAAAAGTTTGCAGCTT GGAGCTGTTGGATCGTTTTTGTCAAAGGCTCTACAGCCACCAGATCCTCTTGCTGTGGAAAATGCAATTGAACTACTTAAAACCATTGGGGCTTTAGATG ATAAGGAGGAGCTTACTCCACTCGGTCGTCATCTTTGTAATCTCCCTGTGGACCCGAATATTGGGAAGTTGCTTTTGATGGGGTGTGTCTTTCAATGCCT CAGCCCTGCTTTAACAATTGCAGCTGCTCTTGCACATCGTGACCCATTTGTGCTGCCAATAGACAGGAAAAGGGAAGCTGATGCTGCAAAAAGATCCTTT GCTGGTGACTCTTGCAGCGACCACATAGCACTTGTTAAAGCTTTTGAAGGATACAAGGAAGCAAAACGCAACCGAAATGAAAGAGCATTTTGTTGGGAGT ATTTCTTGTCCCCTGTTACTTTGCGGATGATGGAGGATATGAGAGACCAGTTTCTGAACTTGCTATCAGACATTGGCTTCGTAAACAAATCCAGGGGTGT TAGTGCTTATAATCAATATAGCCATGACATGGAGATGGTATCAGCAATCCTTTGTGCTGGTCTTTACCCAAATGTTGTGCAATGTAAAAGAAGAGGAAAG CGAACAGCATTCTTCACTAAGGAAGTTGGGAAAGTTGACATCCATCCTGCATCTGTAAATGCTGGGGTCCATCTCTTCCCTCTGCCTTACATGGTTTATA GTGAAAGGGTGAAAACAACTAGCATTTATGTCCGAGACTCAACAAACATTTCAGATTATGCTTTGCTTCTTTTTGGTGGTAATCTCGTTGCCAGCAAAAA TGGAGAGGGTATTGAGATGCTAAGAGGTTACCTCCATTTCTCAGCATCGAAGAGTGTATTGGATTTGATACAGAAACTGAGGGGAGAACTAGACAAGCTT CTGAGTAAGAAAATTGAGGACCCATGCCTGGACATTAACGTGGAGGGAAAGGGAGTTGTATCTGCGGTGGTTGAGTTATTGCACAGTTACAATGTAAGGT ACTAA
AA sequence Show only first row Show all	>Potri.016G068900.3 pacid=42810682 polypeptide=Potri.016G068900.3.p locus=Potri.016G068900 ID=Potri.016G068900.3.v4.1 annot-version=v4.1 MFLARRSHGAPSFFSKHLLLAAPALSSTTLSYIHRDISTHAMSRRPNFQGGRRGGGGVPRRGGDRGRGRGGRGGGRGEQRWWDPVWRAERLRQKQSEMEV LDEDEWWSKMEQMKLRGEQEIIMKRSFSRDDQQKLSDMAFELGLHFHAYNKGKTLVVSKVPLPDYRADLDEQHGSTQKEIQMPTEIERRVGNLLNSSQKA AAGNESNATSSQGGKHASLGGKIVKPASMLETDAAKEKQSIELKQKQDKLKASSSVKEMQSFREKLPAFKMRTEFLKAVAENQVLVISGETGCGKTTQLP QYILEEGISSLRGAHYNIVCTQPRRISAISVAARIASERGESLGETVGYQIRLEALRSAQTRLLFCTTGVLLRKLVQDPNLTGVSHLAVDEIHERGMNED FLLIILRDLLPRRPDMRLILMSATINADLFSKYFRNAPTIHIPGLTFPVSEFYLEDVLEKTRYEIQELDSFQGNSRQRRREQYSKKDPITELFEEVDIGS QYKNYSASTRLSLEAWSGSQLDLGLVEATIEYICRHEREGAVLVFLTGWDEISKLLEQIKGNKLLGDQSKFLVLPLHGSMPTINQREIFDRPPPNKRKIV LATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWVSKASAHQRRGRAGRLQPGVCYRLYPKIIHDSMLQYQLPEILRTPLQELCLHIKSLQL GAVGSFLSKALQPPDPLAVENAIELLKTIGALDDKEELTPLGRHLCNLPVDPNIGKLLLMGCVFQCLSPALTIAAALAHRDPFVLPIDRKREADAAKRSF AGDSCSDHIALVKAFEGYKEAKRNRNERAFCWEYFLSPVTLRMMEDMRDQFLNLLSDIGFVNKSRGVSAYNQYSHDMEMVSAILCAGLYPNVVQCKRRGK RTAFFTKEVGKVDIHPASVNAGVHLFPLPYMVYSERVKTTSIYVRDSTNISDYALLLFGGNLVASKNGEGIEMLRGYLHFSASKSVLDLIQKLRGELDKL LSKKIEDPCLDINVEGKGVVSAVVELLHSYNVRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35920			RNA helicase family protein (....		Potri.016G068900 [exp]	0	1
AT1G18070			Translation elongation factor ...		Potri.013G093400 [exp]	4.47	0.6933
AT1G20410			Pseudouridine synthase family ...		Potri.005G247500 [exp]	6.32	0.6488
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Potri.010G217900 [exp]	17.43	0.6757
AT1G58060			RNA helicase family protein (....		Potri.004G222900 [exp]	17.57	0.6769
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Potri.005G021400 [exp]	20.66	0.6609
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Potri.003G114000 [exp]	27.92	0.5925
AT2G30530			unknown protein		Potri.013G160100 [exp]	28.14	0.6495
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.011G091900 [exp]	31.17	0.6646	ARF6.4
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Potri.010G001400 [exp]	38.57	0.5851
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Potri.007G074800 [exp]	39.20	0.6128

Compare expression of checked genes

Potri.016G068900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.