Potri.016G069100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G05680 1984 / 0 EMB2016 embryo defective 2016 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021265 2283 / 0 AT3G05680 2056 / 0.0 embryo defective 2016 (.1.2)
Lus10013587 1803 / 0 AT3G05680 1603 / 0.0 embryo defective 2016 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF15912 VIR_N Virilizer, N-terminal
Representative CDS sequence
>Potri.016G069100.2 pacid=42809430 polypeptide=Potri.016G069100.2.p locus=Potri.016G069100 ID=Potri.016G069100.2.v4.1 annot-version=v4.1
ATGGGTCGACCCGAACCCAGCGTCTTGTTCTCTCAAACTTTCGTTCATCCTCAACTGGATGAGTACGTCGACGAGGTATTGTTCGCCGAACCAATTGTGA
TTACTGCGTGTGAGTTTCTTGAACAGAATGCTTCTTCTGCGTCACAAGCAGTGTCGGTACTGGGGGCTACGTCACCTCCTTCATTTGCTTTGGAGGTGTT
TGTTAAGTGTGAGGGGGAGACAAGATTTAGACGACTCTGCCAGCCATTCCTCTATTCCCATTCGTCATCACATGTGCTAGAAGTTGAGGTGGCTGTTGTA
ACTAACCATCTGGTTGTGAGGGGCAGCTATCGCAGTCTAAGTTTGGTCATATATGGGAACACAGCTGAGGATCTGGGGCAGTTCAGCATTGAATTTGATG
ATAGCTCTTTAACTAATCTTGTTAGTTCTGCTGAGGGAAAGCTCGAGGATCTCCCTTTGGCATTACATTCAACTAATCGTACTGTTGAGGATTCTCTATC
CTCTCTGAATGTATTATCTTTACCTGTTGCTGCTTCACATATATCTGCTGAGGTTAAGCAATTTTTGCAGCTGATTTTGAAGTTGCTGGAGCTCCCGAAC
CTTAGTGATTCTGTACATAGAGTTCTTACTACTGTAGTGAAAGCTGTTTGTTCCTTTGTCACCCGTGATTTGTGTTGTGAAACAGTAAATCAGAAGCACA
TTAAAATGTGTGGATCCAAAAACATTGAAGAGTTTCACCATGTTATCAATGAGGCTAGAAATGAGCTTCTCCAAGTGCTTGGACAAGTCTTAGGAGATGA
ATCGGCTGAACTTTTGGCAGACTGCACATTTCTTGAGTCGGAGGCTGACTTGGCTACTTCTAAACAGCTGGTGGACATGTTAAGCCAGTATTTCTCTTTT
GAAAGGAACTCCACAAATGTTGGAGCTTGCCAGCTTTCACAGAACAAGAGTGTCATTCTGGGTCTGAGCTTGGCTCTTTTATTGTGCTCTGGTAGAGAAA
GCTGCTTTCACTTCGTCAGTAGTGGGGGAATGGAGCAGCTTGCACATATTTTTTCTAATGAGGTGCAGAATTCTTCCGCCATAATTTTACTATCACTTGG
AGTTGTTGAGCAGGCAACAAGGCATCCAATTGGCTGTGAAGGATTTTTAGGTTGGTGGCCTCGTGAAGATGAAAATATCCCATCTGGTACTAGCAAAGGT
TATAGTCAATTGTTGAAGTTGGTCCTACAGAGACCTCAGCATGATGTTGCTTCTCTTGCAACCTATGTCCTTCATCGGTTACGATTTTATGAAGTTGTTT
CTAGATATGAGTTTTCTGTTCTTTCTGCTCTAGGGGGACTTTCTGCACTTGGAAGAGTTACAAGTGTTACGTCAGCAATGCTTAACAGTGCTAAATCTCA
ACTTAAGATGCTCTTGAAATTGATAAATTTGCGTGGTCCAATTGAAGATCCTTCTATAGCAGCCTCTGCAAGTAGGTCATTGATCATTGGTCAAACAGAA
GGATTATTGTCATATAAAGCAACCAGTAACTTGGTTGGTTCATCACATTGCTGCTTTTCAAACTGGGATATTGATTCCCATTTGCTGGCACTTCTCAAGG
AGAGAGGCTTTCTTCCTTTGTCAGCTGCACTGTTGTCGTCCCCCATATTGCGTTCAGAAGCTGTAGATGCCATGGATACATTTGTTGATATCGCATCAAC
TATTGGGGCCATACTTCTTTCACTTCTTATGTGTCGCTCAGGTTTAATTTTTCTCTTAAATTACCCTGAGCTTTGCACTACACTAATTGATGCTTTAAGG
GGTGTGGGTGGTATGAATAGGGAAGAATGTGTTCCTCTACGTTATGCATCTGTTTTATTGTCCAAGGGTTTCGTTTGCAGTCCACATGAAGTTGGAGTGA
TTGTTGAGACGCATTTGAGAGTGGTTAATGCTATTGATCGTTTGCTAATATCAACTCCACATCCCGAAGAGTTTCTATGGGTATTGTGGGAGCTTTGTGG
CCTTTCCAGGTCAGATTGTGGGCGCCAGGCTTTGTTGGTTCTGGGATATTTTCCTGAGGCCATTTCAATCTTGATTGAAGCCTTACATTCTGTCAAGGAG
TCAGAGCCAGTTGCTAGTGGAGCTTCTCCAATAAATCTTGCGATTTTTCACTCGGCTGCAGAGATTTTTGAAGTCATTGTCACTGATTCAACTGCATCTT
CCCTTGATTCTTGGATTGGACATGCTATGGAACTTCATAAAGCGTTACATTCTTCTTCCCCTGGTTCCAATCGGAAAGATACTCCAACTAGACTGTTGGA
GTGGTTTGATGCTGGTGTAGTTTATCATAAAAACGGGGCTATTGGTCTTCTACGGTATTCTGCTGTGTTGGCTTCTGGTGGAGATGCCCATTTAACCTCC
ACCAGCATTTTGGTGGCTGATTTGACAGATGTTGAGCAAGTTGTTGGAGATGCATTGGGTGGTTCGGACATAAATGTTATGGATAATCTTGGAAAGTTGA
TCTCTGATAAGTCTTTTGAGGATAATCCTCTTCGTGACTCATCCATAACACAGATGACAACAGCCATTCGGATACTGGCCTTTGTGTCAGAAAACTCAAC
TGTTGCTGCTGCTCTGTATGATGAAGGTGCTCTCATAGTTATTTATGCAATTCTGATCAAGTGCAGCTTGATGCTTGAAAGGTCATCAAACAGTTATGAT
TACCTTGTTGATGAGGGTACAGAACGCAATTCTACATCTGATTTGCTATTGGAACGTAATCGTGAGCAGAGCTTGGTTGATCTTTTGGTACCTACTCTGG
TATTGCTGATCAATCTTTTGCAGAAATTACAAGAAGCTAAAGAGCAGCACAGGAATACAAAACTAATGAATGCCCTTTTGCGACTGCACAGAGAAGTTAG
TCCAAAGCTAGCTGCAAGTGCTGCAGACTTATCATCTCCCTATCCTGATTCTGCACTTGGTTTTGGAGCTGTCTGCCATCTTGTTGTATCAGCACTTACT
TGTTGGCCCTTATATGGCTGGACTCCTGGGCTTTTCCACTCTCTTCTTGCAAATGTTCAAGCTACTTCACTGTTGGCCTTGGGTCCAAAGGAAACCTGCA
GTTTGCTGTGTCTTCTGAATGATTTATTTCCTGAAGAAGGTGTCTGGCTTTGGAAAAATGGAATGCCCATGTTAAGTGCGCTAAGAAAATTGGCTGTTGG
GACATTATTGGGGCCACAGAAGGAGAAACAGGTTGACTGGTATCTGGAGACTTCACACCGTGAGAAACTGCTTAACCAACTGACACCACATCTCGATAAA
ATTGCACAGATTATCGAACATTATGCTATATCTGCATTGGTGGTCATTCAAGACATGCTTCGGGTTTTCATAATTCGAATTGCTTGCCAAAAGATTGAGT
ATGCTTCTTTGCTTCTGCAGCCCATTTTATGCTGCATCCGCAATCATCTTTCTGACTTGACTTCTCCATCAGAGATTGATGCTTACAAGGTTTACAGATA
TCTTGATTTTCTTGCGAGCATATTGGAACATCCATGTGCAAAGGAACTGTTATTGGAGGAAGGCATTGCTGAGATGCTAACACAAGTGCTGGAAAGGTGT
TTAGTTGCTATCGGTTCAGATGGAAAACAGATCTCAGATAGTAAAATTTCAGCCAAGTCTGGGTTTACTTTGATCAGTTGGTGCTGTCCCGTGTTCAAGT
CCTTCTCACTTCTTTGTGTTCCTCGAACACCTTTACCATACCCCGTGAGACATGATTTGCACAGTTCTGCAAGTTTAAGTGCTAAAGACTGTTCATTGAT
TCTACCATATCTGCTTAAGTCCTGCCAGGTCTTACCGGTTGGAAAAGAGTTGCTTTCTTGCCTTGCATTCTTTAAAGATTTAGGTTCCTGCAATGAAGGT
CAAAGTGCTTGTGTGACGACTTTGCATCACATCAACACCAGCATTGAGGAACATGAATCTGGAAAAGGACAGGAAAGGAATGGGAATTATAATTTGGATG
ACATTGAATGGAGAAAGCATCCTCCTTTGCTTTCTTGCTGGATTAGGTTGTTGGAATCAGTGGATTCAAAAGATGACGCCTCAATTTGTGCACTTGAGGC
TGTTACTACATTATCTATTGGTGCTTTGTGCTTTTGCTTGGATAGTAAATGTAATTTGAATTTGAATGGGGTGGCTGCGATAAAAAAACTTTTCGGTATC
CATGATGATATGGATGGGACAGATAGCTCTCCAGAGAACATAGGTTTCATACTGGAAATGATTACACTTCTGAGTTCAAAGTTAAATGATGATGACTATC
TAGCTACAGATATGAGGGAAAGTTTGTATCAAGCTTCAGATTCTGCGAAGTCATTGCTGCTATTGTTGCAGAAGCCCACTGGTTCAGTTACAATAGATGA
CATTATGAGCAGTGAAGGCATTCAATCTCTACCATCAAATGAGCTTCTGGTTCATTCAAGAATAAATCAGATGGCAGATGGCACTGCTGAAAAGTTTGAT
GGTTACCTTTACCTAGGAGGCCTTGGAGATAAATTTCTGTGGGAATGTCCAGAAACCTTACCTGATAGATTGTCGCAGAATCCTTCTATGAAAAGGAAAT
TAGCATCATTGGATGGTTCTGGTAAGCGTGTCAAGGGAGAAACTTCAGTGGCTGAAGCTACTGTACAAAATGCATTTTCACGGGGAATGGGTTCATCAAC
TGCTCCTTCTGGTCCGACTCGCAGGGACACCTTTAGGCAGCGCAAGCCAAATACCAGTAGGCCTCCATCCATGCACGTTGACGACTATGTTGCTAGAGAA
AGAAGTGTTGATGGTGTTAGCAATTCAAATGTTATAGCAGTCCAGCGAGTGGGATCTACAGGTGGAAGACCTCCGTCAATTCATGTGGATGAATTTATGG
CCAGGCAAAGAGAACGCCAGAATCCAATGGTAGCTGTTGTTGGGGAACCTTCAGCAAAGGTTAAGAATGCAACCCCTGCGAATGATGTAGACAAGGAAAA
AGACAACAAGTCTAAGCAATTGAAAACTGTTCTGGATGATGATCTTCAGGGAATAGATATTGTTTTTGATGGTGAGGAGTCTGAATCTGATGACAAATTG
CCTTTTCCTCAGCCTGATGATAATCTGGAGCAGCTAGCCCCTGTCATAGGCGACCAAAGTTCTCCCCACTCGATTGTTGAAGAGACTGAGAGTGATGTTA
ATGGAAACAATCAATTTTCTCATTCACACACACCATTAGCATCTCATGTTGATGAGAACACCCAAAGTGAATTCTCTTCAAGGATGTCTGTTTCACGACC
TGAAATGCCGTTGACACGAGAACCAAGTGTTTCTTCGGATAAGAAGTTTTTTGAGCAACCTGATGATGCAAAGAATACCATTAAGACTTCTGCTGGCTTT
GATTCTATTTCAGCTGCAAGTACTTCAGGTTTTCCTCATCAGATTCCAGTTGATTCAAGGATGCCTCCACAAAATTTCTATATGAAGAACAGCTTGCAGC
ATTCTTCAGGATCTCGAGGACTTTATGACTCTAAAATTCCTCTGAATCAGCCACCTTTGCCTCCAATGCCACCTCCAGCAATGTCATCCATGATACCTCA
GAATCATGATCCAGGCCCAACTCAGTCATCCCCCTATGTTAACTCTGGAACAGAGGTGCAGCCTCCACTTCCTGCAGCCTTCCAAGTTCAGTCAGATTAT
CTATCTGCATTTGGTAGCAATCCTTCCATTCAGATGCCAGATTCCAAGTATTCACGTGCTTCTATCTCTTCTCCCAGTGGATCTGCCGGGCCTCACCCAC
CACTTCCTCCTACACCACCTCCCTTCTCATCTAGTCCATATAATTTACCTTCTTTAAATCCTTCTACTTCTCAATCTTCAGTATATACTGTTGGAACAAA
TGAGCTTCCCCAGACCTCTACTTCACCACCAATTGATCCGAGATTAGGAAATCTCTCTGTGTCGGGTGCTGGTTTAACTTCTTATATGCCACCTCCTCTA
ATGCCACCCATGGTTTTCAGTAGGCCAGCTACAATCCCTGTGACTCCTTATGGAAGCATCCCCACCCAGCAGCAAGGCGAGAGTCCAAATGTCTTGCAAA
ATCTCTCCATTCCTCAGCCTTCTGTTCAGTCAATACATCAGCTGCAGCCTCTTCAGCCTCCGCTTCGACGTCCACCACAGCCACCTCAACATCTTTGGTC
ACTTGCACAATCTTCTCAGCAGCTGGAACAAGGGGGGTCTTTGCAAAGTTCTATTCAAATGCAAGGCCATCAATTACAAATGCTGCAACAACAACAACTC
CCTTCTGTGCATGCTCATTATCAAGCTCAGCAGCAAGAGCTTTCTCAGTCAAGGCAGCAGCTAGTTGAGCATGCACAGCCACATGTTATACATCAGCAGG
GAGATGTTTCATCCCAGCAGCAACAAGATCTTGGAATGTCGTTACAGGAGTACTTCAAGGATCCAAAAGCTATCACGTCTTTATTGAGTAACAAGGAAGA
GCTGTGCCGGCTTTTGGAGCAAAATCCAAAATTAATGCAGATGCTTCAGGAAAGACTAGGCCAGCAATAG
AA sequence
>Potri.016G069100.2 pacid=42809430 polypeptide=Potri.016G069100.2.p locus=Potri.016G069100 ID=Potri.016G069100.2.v4.1 annot-version=v4.1
MGRPEPSVLFSQTFVHPQLDEYVDEVLFAEPIVITACEFLEQNASSASQAVSVLGATSPPSFALEVFVKCEGETRFRRLCQPFLYSHSSSHVLEVEVAVV
TNHLVVRGSYRSLSLVIYGNTAEDLGQFSIEFDDSSLTNLVSSAEGKLEDLPLALHSTNRTVEDSLSSLNVLSLPVAASHISAEVKQFLQLILKLLELPN
LSDSVHRVLTTVVKAVCSFVTRDLCCETVNQKHIKMCGSKNIEEFHHVINEARNELLQVLGQVLGDESAELLADCTFLESEADLATSKQLVDMLSQYFSF
ERNSTNVGACQLSQNKSVILGLSLALLLCSGRESCFHFVSSGGMEQLAHIFSNEVQNSSAIILLSLGVVEQATRHPIGCEGFLGWWPREDENIPSGTSKG
YSQLLKLVLQRPQHDVASLATYVLHRLRFYEVVSRYEFSVLSALGGLSALGRVTSVTSAMLNSAKSQLKMLLKLINLRGPIEDPSIAASASRSLIIGQTE
GLLSYKATSNLVGSSHCCFSNWDIDSHLLALLKERGFLPLSAALLSSPILRSEAVDAMDTFVDIASTIGAILLSLLMCRSGLIFLLNYPELCTTLIDALR
GVGGMNREECVPLRYASVLLSKGFVCSPHEVGVIVETHLRVVNAIDRLLISTPHPEEFLWVLWELCGLSRSDCGRQALLVLGYFPEAISILIEALHSVKE
SEPVASGASPINLAIFHSAAEIFEVIVTDSTASSLDSWIGHAMELHKALHSSSPGSNRKDTPTRLLEWFDAGVVYHKNGAIGLLRYSAVLASGGDAHLTS
TSILVADLTDVEQVVGDALGGSDINVMDNLGKLISDKSFEDNPLRDSSITQMTTAIRILAFVSENSTVAAALYDEGALIVIYAILIKCSLMLERSSNSYD
YLVDEGTERNSTSDLLLERNREQSLVDLLVPTLVLLINLLQKLQEAKEQHRNTKLMNALLRLHREVSPKLAASAADLSSPYPDSALGFGAVCHLVVSALT
CWPLYGWTPGLFHSLLANVQATSLLALGPKETCSLLCLLNDLFPEEGVWLWKNGMPMLSALRKLAVGTLLGPQKEKQVDWYLETSHREKLLNQLTPHLDK
IAQIIEHYAISALVVIQDMLRVFIIRIACQKIEYASLLLQPILCCIRNHLSDLTSPSEIDAYKVYRYLDFLASILEHPCAKELLLEEGIAEMLTQVLERC
LVAIGSDGKQISDSKISAKSGFTLISWCCPVFKSFSLLCVPRTPLPYPVRHDLHSSASLSAKDCSLILPYLLKSCQVLPVGKELLSCLAFFKDLGSCNEG
QSACVTTLHHINTSIEEHESGKGQERNGNYNLDDIEWRKHPPLLSCWIRLLESVDSKDDASICALEAVTTLSIGALCFCLDSKCNLNLNGVAAIKKLFGI
HDDMDGTDSSPENIGFILEMITLLSSKLNDDDYLATDMRESLYQASDSAKSLLLLLQKPTGSVTIDDIMSSEGIQSLPSNELLVHSRINQMADGTAEKFD
GYLYLGGLGDKFLWECPETLPDRLSQNPSMKRKLASLDGSGKRVKGETSVAEATVQNAFSRGMGSSTAPSGPTRRDTFRQRKPNTSRPPSMHVDDYVARE
RSVDGVSNSNVIAVQRVGSTGGRPPSIHVDEFMARQRERQNPMVAVVGEPSAKVKNATPANDVDKEKDNKSKQLKTVLDDDLQGIDIVFDGEESESDDKL
PFPQPDDNLEQLAPVIGDQSSPHSIVEETESDVNGNNQFSHSHTPLASHVDENTQSEFSSRMSVSRPEMPLTREPSVSSDKKFFEQPDDAKNTIKTSAGF
DSISAASTSGFPHQIPVDSRMPPQNFYMKNSLQHSSGSRGLYDSKIPLNQPPLPPMPPPAMSSMIPQNHDPGPTQSSPYVNSGTEVQPPLPAAFQVQSDY
LSAFGSNPSIQMPDSKYSRASISSPSGSAGPHPPLPPTPPPFSSSPYNLPSLNPSTSQSSVYTVGTNELPQTSTSPPIDPRLGNLSVSGAGLTSYMPPPL
MPPMVFSRPATIPVTPYGSIPTQQQGESPNVLQNLSIPQPSVQSIHQLQPLQPPLRRPPQPPQHLWSLAQSSQQLEQGGSLQSSIQMQGHQLQMLQQQQL
PSVHAHYQAQQQELSQSRQQLVEHAQPHVIHQQGDVSSQQQQDLGMSLQEYFKDPKAITSLLSNKEELCRLLEQNPKLMQMLQERLGQQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G05680 EMB2016 embryo defective 2016 (.1.2) Potri.016G069100 0 1
AT5G20490 XI-17, ATXIK, X... MYOSIN XI-17, MYOSIN XI K, Myo... Potri.001G199200 2.00 0.9262 MYA1.1
AT3G57300 ATINO80 INO80 ortholog (.1.2) Potri.016G043500 2.00 0.9229 CHR929
AT5G15920 EMB2782, SMC5 EMBRYO DEFECTIVE 2782, structu... Potri.001G262600 2.82 0.9063
AT5G11530 EMF1 embryonic flower 1 (EMF1) (.1) Potri.018G039500 3.60 0.8860
AT1G15780 unknown protein Potri.001G204900 4.89 0.9087
AT4G31880 unknown protein Potri.006G263300 5.29 0.9027
AT1G80070 EMB33, EMB177, ... ABNORMAL SUSPENSOR 2, EMBRYO D... Potri.003G031900 5.65 0.9018 Pt-EMB177.4
AT1G27595 unknown protein Potri.002G107400 5.74 0.8862
AT2G25170 CKH2, SSL2, GYM... SUPPRESSOR OF SLR 2, GYMNOS, C... Potri.006G262200 6.63 0.8798 PKL.2
AT5G47010 ATUPF1, UPF1, L... LOW-LEVEL BETA-AMYLASE 1, RNA ... Potri.003G086400 9.00 0.8985

Potri.016G069100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.