Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52450 511 / 0 PUB22 plant U-box 22 (.1) AT2G35930 503 / 3e-178 PUB23 plant U-box 23 (.1) AT3G11840 266 / 1e-84 PUB24 plant U-box 24 (.1) AT3G19380 199 / 2e-59 PUB25 plant U-box 25 (.1) AT1G66160 184 / 2e-53 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT1G49780 176 / 1e-50 PUB26 plant U-box 26 (.1) AT5G37490 176 / 2e-50 ARM repeat superfamily protein (.1) AT5G09800 141 / 1e-37 ARM repeat superfamily protein (.1) AT5G64660 137 / 2e-36 ATCMPG2 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) AT3G18710 135 / 2e-35 ATPUB29 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G202600 [exp] 768 / 0 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.009G016200 [exp] 555 / 0 AT2G35930 475 / 4e-167 plant U-box 23 (.1) Potri.001G216100 [exp] 522 / 0 AT2G35930 452 / 5e-158 plant U-box 23 (.1) Potri.006G202700 [exp] 374 / 1e-127 AT3G11840 362 / 3e-122 plant U-box 24 (.1) Potri.009G016100 [exp] 360 / 6e-122 AT3G11840 326 / 6e-108 plant U-box 24 (.1) Potri.016G069500 [exp] 354 / 1e-119 AT3G11840 367 / 7e-124 plant U-box 24 (.1) Potri.001G216300 [exp] 332 / 4e-111 AT3G11840 303 / 6e-99 plant U-box 24 (.1) Potri.002G174500 [exp] 299 / 5e-98 AT2G35930 249 / 9e-79 plant U-box 23 (.1) Potri.014G101100 [exp] 288 / 4e-94 AT2G35930 266 / 3e-85 plant U-box 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021267 [exp] 536 / 0 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10013584 [exp] 533 / 0 AT2G35930 471 / 2e-165 plant U-box 23 (.1) Lus10016166 [exp] 530 / 0 AT3G52450 462 / 2e-161 plant U-box 22 (.1) Lus10029393 [exp] 528 / 0 AT3G52450 462 / 1e-161 plant U-box 22 (.1) Lus10004191 [exp] 295 / 2e-94 AT3G11840 300 / 2e-95 plant U-box 24 (.1) Lus10000800 [exp] 289 / 5e-94 AT3G11840 293 / 7e-95 plant U-box 24 (.1) Lus10029395 [exp] 281 / 2e-90 AT3G11840 296 / 8e-96 plant U-box 24 (.1) Lus10008368 [exp] 276 / 5e-89 AT3G11840 284 / 2e-91 plant U-box 24 (.1) Lus10004095 [exp] 244 / 3e-79 AT2G35930 228 / 3e-73 plant U-box 23 (.1) Lus10013352 [exp] 229 / 2e-73 AT2G35930 212 / 6e-67 plant U-box 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.016G069400.1 pacid=42810247 polypeptide=Potri.016G069400.1.p locus=Potri.016G069400 ID=Potri.016G069400.1.v4.1 annot-version=v4.1 ATGGAAGATATTGAAGTCCCTTCATTTTTTCTCTGCCCTATTTCTCTCCAAATCATGAAAGACCCGGTTATAGTCCCAACTGGGATAACTTATGATCGTG AGAGCATTGAGAAATGGCTGTTTTCAAGCAAGAATGATACCTGTCCAGTCACAAAACAAGTGATATCAGGTTGTGAGGTGACACCAAACCATACTCTTAG GAGGTTGATTCAATCTTGGTGCACCCTCAATGCGTCATATGGTGTTGAAAGAATCCCAACTCCAAAGCCTCCAATTAGCAAAGCACAGATTGCCAAGCTT CTCAATGATGCTAAATCGCCGGAGCAACAGGTTACGTGTCTAAGGAAGCTACGTTCCTTCGCTAACGAGAATGAAACAAACAAAAGATGCATGGAGGCTG CAGGTGCTGTAGAGTTCTTGGTCTCAATGCTAAATAACTTCCATTCTTTATCATTTGAAGTAACTTCAGATGATGGGTTTGAGATCTCAAGACCAAGTGA TGAGGCCTTGAGTATTCTCTACGGTCTACAAATATCAGAATCTGGCCTAAAGAATCTTGTTATGGGAAGAAATGGTGAATTCATTGAGACCTTAACGAAA GTTATGCAAGGCGGAAACTATGAGTCTCGAGCTTATGCGGTCTTCTTGTTGAAATCGATGCTTGAAGTTGCTGATACACTGAAACTCATCAGTTTGAAAC ATGAACTCTTCGACGAAATAGTCCAAGTTTTACGTGATCAAATATCTCACCAAGCATCAAAAGCTACATTGCAACTGCTAATAAGTCTTTGTCCATGGGG AAGAAACAGAATCAAAGCCATTGAAGCTAAGGCAGTCCCGGTTCTGATTGATCTTCTACTTGATTCACCAGAGAAAAGAACCTGCGAGATGGTGCTAATG GTGCTGGACCTGCTATGCCAGTGTGCAGAAGGAAGAGCTGAATTGTTAGGGCACGGTGCAGGCCTAGCTATTGTTTCAAAGAAGATACTTAGGGTTTCTC AGGTGGCAAGCGAGAGGGCAGTGAGGATCATCTTGTCTATCTCAAAGTACTCAATAACTACTAGTGTTCTTCAAGAGATGTTGCAGATTGGCATCGTGGC CAAGCTATGTTTGGTGCTTCAAGTGGATTGCGGAAGCAAGATCAAAGACAAGGCAAGAGAGGTGCTTAAAATGCAAGCTAGAGTTTGGAAGAGTTCTCCT TGCATACCAGCAAATCTGCTCTCTTCATATCCAGAATGA
AA sequence Show only first row Show all	>Potri.016G069400.1 pacid=42810247 polypeptide=Potri.016G069400.1.p locus=Potri.016G069400 ID=Potri.016G069400.1.v4.1 annot-version=v4.1 MEDIEVPSFFLCPISLQIMKDPVIVPTGITYDRESIEKWLFSSKNDTCPVTKQVISGCEVTPNHTLRRLIQSWCTLNASYGVERIPTPKPPISKAQIAKL LNDAKSPEQQVTCLRKLRSFANENETNKRCMEAAGAVEFLVSMLNNFHSLSFEVTSDDGFEISRPSDEALSILYGLQISESGLKNLVMGRNGEFIETLTK VMQGGNYESRAYAVFLLKSMLEVADTLKLISLKHELFDEIVQVLRDQISHQASKATLQLLISLCPWGRNRIKAIEAKAVPVLIDLLLDSPEKRTCEMVLM VLDLLCQCAEGRAELLGHGAGLAIVSKKILRVSQVASERAVRIILSISKYSITTSVLQEMLQIGIVAKLCLVLQVDCGSKIKDKAREVLKMQARVWKSSP CIPANLLSSYPE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52450		PUB22	plant U-box 22 (.1)		Potri.016G069400 [exp]	0	1
AT1G74360			Leucine-rich repeat protein ki...		Potri.012G067600 [exp]	2.82	0.8713
AT3G50900			unknown protein		Potri.007G022300 [exp]	3.16	0.8922
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.007G044000 [exp]	5.19	0.8722
					Potri.009G085900 [exp]	6.00	0.8575
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.001G099001 [exp]	6.16	0.8850
AT2G32070			Polynucleotidyl transferase, r...		Potri.006G262500 [exp]	9.48	0.8174
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.002G114500 [exp]	10.95	0.8386
AT4G18450	AP2_ERF		Integrase-type DNA-binding sup...		Potri.011G061800 [exp]	12.00	0.8043
AT2G39420			alpha/beta-Hydrolases superfam...		Potri.010G212200 [exp]	13.07	0.8455
AT2G37820			Cysteine/Histidine-rich C1 dom...		Potri.010G198200 [exp]	13.49	0.8553

Compare expression of checked genes

Potri.016G069400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.