Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11680 462 / 3e-160 Aluminium activated malate transporter family protein (.1) AT1G08440 383 / 6e-129 Aluminium activated malate transporter family protein (.1) AT1G08430 362 / 8e-121 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1) AT2G27240 352 / 7e-117 Aluminium activated malate transporter family protein (.1) AT4G00910 304 / 3e-98 Aluminium activated malate transporter family protein (.1) AT5G46610 244 / 2e-74 Aluminium activated malate transporter family protein (.1.2.3) AT4G17970 239 / 9e-73 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT5G46600 229 / 6e-69 Aluminium activated malate transporter family protein (.1) AT3G18440 168 / 9e-46 ATALMT9 aluminum-activated malate transporter 9 (.1) AT2G17470 162 / 3e-44 AtALMT6, ALMT6 ALuminium activated Malate Transporter 6, Aluminium activated malate transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G203100 [exp] 715 / 0 AT3G11680 470 / 4e-163 Aluminium activated malate transporter family protein (.1) Potri.016G070100 [exp] 610 / 0 AT3G11680 507 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.009G017800 [exp] 479 / 1e-166 AT2G27240 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.001G217200 [exp] 475 / 3e-165 AT2G27240 445 / 6e-153 Aluminium activated malate transporter family protein (.1) Potri.009G017900 [exp] 454 / 4e-157 AT1G08440 389 / 3e-131 Aluminium activated malate transporter family protein (.1) Potri.001G217400 [exp] 440 / 2e-151 AT1G08440 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.001G217050 [exp] 432 / 1e-148 AT2G27240 457 / 9e-158 Aluminium activated malate transporter family protein (.1) Potri.001G217300 [exp] 431 / 5e-148 AT1G08440 407 / 2e-138 Aluminium activated malate transporter family protein (.1) Potri.003G145000 [exp] 337 / 9e-111 AT4G00910 484 / 5e-168 Aluminium activated malate transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021272 [exp] 541 / 0 AT3G11680 535 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10013577 [exp] 529 / 0 AT3G11680 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10001846 [exp] 363 / 1e-121 AT2G27240 413 / 6e-141 Aluminium activated malate transporter family protein (.1) Lus10001849 [exp] 357 / 1e-119 AT1G08440 389 / 1e-131 Aluminium activated malate transporter family protein (.1) Lus10001528 [exp] 295 / 9e-95 AT4G00910 490 / 2e-170 Aluminium activated malate transporter family protein (.1) Lus10033223 [exp] 292 / 6e-94 AT4G00910 490 / 5e-171 Aluminium activated malate transporter family protein (.1) Lus10004556 [exp] 246 / 3e-75 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10000898 [exp] 233 / 2e-70 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10030975 [exp] 219 / 4e-65 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10013347 [exp] 189 / 2e-55 AT3G11680 232 / 6e-72 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [poplar] [flax] FUSC PF11744 [poplar] [flax] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Potri.016G070000.1 pacid=42809384 polypeptide=Potri.016G070000.1.p locus=Potri.016G070000 ID=Potri.016G070000.1.v4.1 annot-version=v4.1 ATGGAGATTGATCAGTCAACAATTCAAGAGAAGGCTGGACCTTTAACGCGTGCATGGGGCTTGCTCAAGGTTTTGCCTGGTAAGGCCGAGGCCGAGATTT TAAGGGTTGCAAAGAGCATAAAAAAACTTGGAAAGGATGACCCAAGAAGAATCATCCACTCCCTAAAAGTGGGACTAGCTCTCACACTGTCGTCCTTAAT ATATTACTTGAGGCCCCTCTATGATGGCTTTGGGACTGCAGGAATCTGGGCTGTGCTAACTGTGGTGGTAGTTTTCGAATTCACCGTCGGTGGAACCTTG AGCAAGAGTTTGAATAGAGGTTTTGCAACATTAGTAGCTGGTGCTCTAGGGCTTGGAGCTCAGCAATTGGCCAGTCTCTTTGGCGACAAAGGGGATCCCA TTGTCCTTGGAATCCTTGTCTTCTTGTTAGCTGCAGTATCTACTTTCATGCGATTCTTCCCTCAAATCAAAGCTAGATATGATTATGGAGTCTTGATATT CATATTAACATTCAGTTTGATAGCTCTTTCGGGGTGTCGAGTTGAAGAACTCTTAGAAATGGCACATCAAAGGCTATCAACAATAATAGTCGGTGGAGCA ACATGCATAGTGGTATCCATCTGTATCTGTCCTGTTTGGGCAGGTGAAACTCTTCATAACTCGGTTGCTGCCAATATAGAAAAGCTTGCAAGCTACCTAG AAGGTTTTGGTGGTGAATATTTTCAGTCCTGTGAGCGTTCCAATAGCGACAAATCATTTCTTCAAGGATATAAAAATGTCCTCAATTCAAAATCCACTGA AGAAGCCATGGCAAATCTTGCTAGATGGGAACCTAGACACGGCCGCTTTCGTTCCCGGCATCCATGGAAACAATACTTGAAGATTGGAGAGCTCACACGT CAATGTGCTTACCATATTGAAACTCTTAATGGCTACATCAACTCTGACATCCATGCACCACTAGAATTCCGATGTAAAATCCAAGAACCATGTACACTGA TTAGTGCAGAATGCGGCAAAGCACTGAAATCGCTGGCTTCGGCTATCAAAACCACGACTGTTCCATCCTCAGAAAATGTCAACGTTGAGAACTCCAAAAC TGCAGTCCAGGACCTCAAAATTGCTCTCAAAGCTGTCTCACTTGAGCACGATCAAGACCTTTTACAAATTCTGCCAGCTGCAACAGTTGCATCAATACTA GTTGAAATCGTTATATGCGTGGAGAAAATATCCGAATCAGTACACGGGCTCTCTAACCTAGCACACTTTAAGAGTGTTGAACTTACTGTGTCACCAGAGA AACCGCACAGAGGAAGCATAAAACCTGTTTCAGAGGGTGACAGTGATCATGCTGTTATTACAATACATGGAACATCTCCAGATTCTCCAGGAAATGAGAC TCCTAAGGCACCAAAGCTTGGCTAA
AA sequence Show only first row Show all	>Potri.016G070000.1 pacid=42809384 polypeptide=Potri.016G070000.1.p locus=Potri.016G070000 ID=Potri.016G070000.1.v4.1 annot-version=v4.1 MEIDQSTIQEKAGPLTRAWGLLKVLPGKAEAEILRVAKSIKKLGKDDPRRIIHSLKVGLALTLSSLIYYLRPLYDGFGTAGIWAVLTVVVVFEFTVGGTL SKSLNRGFATLVAGALGLGAQQLASLFGDKGDPIVLGILVFLLAAVSTFMRFFPQIKARYDYGVLIFILTFSLIALSGCRVEELLEMAHQRLSTIIVGGA TCIVVSICICPVWAGETLHNSVAANIEKLASYLEGFGGEYFQSCERSNSDKSFLQGYKNVLNSKSTEEAMANLARWEPRHGRFRSRHPWKQYLKIGELTR QCAYHIETLNGYINSDIHAPLEFRCKIQEPCTLISAECGKALKSLASAIKTTTVPSSENVNVENSKTAVQDLKIALKAVSLEHDQDLLQILPAATVASIL VEIVICVEKISESVHGLSNLAHFKSVELTVSPEKPHRGSIKPVSEGDSDHAVITIHGTSPDSPGNETPKAPKLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11680			Aluminium activated malate tra...		Potri.016G070000 [exp]	0	1
AT5G22470			NAD+ ADP-ribosyltransferases;N...		Potri.009G143900 [exp]	4.24	0.9561
AT5G27060		AtRLP53	receptor like protein 53 (.1)		Potri.001G389100 [exp]	5.91	0.9309	PSCLRR52.53
					Potri.014G178900 [exp]	6.92	0.9349
					Potri.016G047700 [exp]	11.31	0.9285
AT3G22910			ATPase E1-E2 type family prote...		Potri.008G159100 [exp]	14.69	0.8695	ACA13.1
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.012G052200 [exp]	15.00	0.9269
AT2G02220		ATPSKR1	phytosulfokin receptor 1 (.1)		Potri.017G050600 [exp]	15.23	0.8631
AT5G15290		CASP5	Casparian strip membrane domai...		Potri.012G032300 [exp]	16.49	0.9130
AT4G38400		ATEXPL2, ATHEXP...	EXPANSIN L2, expansin-like A2 ...		Potri.009G141400 [exp]	16.97	0.8008
AT1G35910		TPPD	trehalose-6-phosphate phosphat...		Potri.012G001000 [exp]	18.73	0.9199

Compare expression of checked genes

Potri.016G070000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.