Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-DGD1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11670 1118 / 0 DGD1 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) AT4G00550 559 / 0 DGD2 digalactosyl diacylglycerol deficient 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G203200 [exp] 1408 / 0 AT3G11670 1117 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G079400 [exp] 561 / 0 AT4G00550 717 / 0.0 digalactosyl diacylglycerol deficient 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021273 [exp] 1184 / 0 AT3G11670 1127 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10004200 [exp] 1059 / 0 AT3G11670 984 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029403 [exp] 863 / 0 AT3G11670 803 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10013576 [exp] 577 / 0 AT3G11670 546 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10040927 [exp] 538 / 0 AT4G00550 714 / 0.0 digalactosyl diacylglycerol deficient 2 (.1) Lus10009820 [exp] 406 / 1e-134 AT4G00550 552 / 0.0 digalactosyl diacylglycerol deficient 2 (.1) Lus10029404 [exp] 307 / 6e-100 AT3G11670 298 / 7e-97 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10033686 [exp] 191 / 9e-57 AT3G11670 181 / 8e-54 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10004199 [exp] 0 / 1 ND 42 / 2e-11
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00534 [poplar] [flax] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Potri.016G070200.1 pacid=42809490 polypeptide=Potri.016G070200.1.p locus=Potri.016G070200 ID=Potri.016G070200.1.v4.1 annot-version=v4.1 ATGGAAGCAACTTCAACATCAACAAGAACCAATAGCAACAACACGGCTTTCTCTTTAATCTCACGAGGATGGAAAGAGGTCCGTGACTCGGCTGACGCGG ATCTCCAACTAATGAGAGCACGAGCCAACTCATTCAAGAACTTAGCCAACTCATTCGATCGCGAAATCGAAAACTTCTTCAATTCAGCTTCAATTGCATC GTTCTCTGTACCTTCACCGCTCAAACCCTCTACTTCGCCCACAGAAATCGATTTTGTGAAGAAGTTGCAGCCAAAAATTTCCGAAATTCGGAGAGTTTAT TCCGCGCCGGAGATAAGTAAGAAAGTTTTAGAGAAGTGGGGACCTACAGCGAAGTTAGGGATTGATTTGTCGGCGATAAAGAATGCAATTGTGGCGGAGG GGGAGGATGATTTTAGGGGTGGGATTGTGGGATTTGATAGGAGGAGGAAATTGGGGTTTAGGGAGTTCTGGGGGGAGGGGAAGGAGGAAGGGGGAGGGCA ATTCGGGGAATGGGAACCAATACGTGTTCTGAAAAGGAGGTTTAGGGAATTGGAGAAGAAAAGTGAGTTTGGTGAGATATTTGGCGGGTTTAAGAATAGT GAGTTTGTGGAGAAACTGAAGTCTAGCTTGAAAGCAATTCGCAAGGAGCCTCAGGAGTCAAAGGAAGTACCACCACTGGATGTACCTGAGCTTTTGGCAT ATTTGGTCAGGCAATCTGAGCCATTCTTGGATCAGCTTGGTGTTAGAAAAGATGTTTGCGACAAGATAGTGGAGGGCTTGTGCAGAAAACGCAAGAACCA ATTTTTGTTGCCCTCACTGTCTTCAGGAAAATCGACCCTCCTTGATGAGAATGCAAATGATGAACTGGATTTAAGAATAGCGAGTGTTCTTCAAAGCACA GGGCATTGTTATGATGGAGGCTTTTGGACTGACTCATCAAAGCATCACCCATCTGACGGGAAGAGACATGTTGCCATTGTCACAACTGCTAGCCTTCCAT GGATGACTGGAACAGCTGTTAATCCACTTTTTCGAGCAGCATATTTAGCAAAGTCTGAAAAGCAAAATGTTACTCTGCTGGTTCCATGGCTTTGTAAGTC AGATCAAGAACTAGTTTATCCCAATAATCTCACTTTTACTTCACCAGAAGAGCAGGAGAATTATATACGTAACTGGCTTGAGGAAAGGGTTGGCTTTAAA GCAGATTTTAAGATCTCCTTTTATCCAGGAAAGTTCTCAAAAGAAAGGAGAAGCATAATATCTGCCGGGGATACTTCCAAGTTTGTTCCGTCAAAGGATG CTGACATTGCCATCCTGGAAGAACCAGAACACCTGAATTGGTATCACCATGGAAAGCGCTGGACTGATAAGTTCAATCATGTTGTTGGAGTTGTCCACAC AAATTATCTAGAATACATCAAGAGGGAGAAGAATGGGGCTCTCCAAGCTTTCCTTGTCAAACACATAAACAACTTGGTCACACGAGCATACTGCCACAAG GTTCTTCGCCTCTCTGCTGCCACCCAGGATTTACCGAAGTCTGTCATTTGCAATGTTCATGGTGTGAATCCAAAATTTTTGAAAATTGGGGAAAAAGTTG CAGCTGAAAGGGAACTTGGGCAGCAAGCCTTCTCAAAAGGAGCATATTTCTTAGGCAAGATGGTATGGGCCAAGGGATACAAGGAGTTGATTGATTTGCT GGCAAAACACAAGAATGAGCTGGATGGCTTCAAATTAGATGTATTCGGAAATGGAGAGGATGCAAATGAAGTTCAGAGTACAGCGAAAAGATTGGATTTG AATCTCAACTTTCTTAAAGGAAGAGACCATGCTGATGATTCTCTTCATGGGTACAAAGTTTTCATAAATCCCAGTATCAGTGATGTGCTCTGCACAGCCA CTGCTGAGGCTCTTGCAATGGGAAAATTTGTTGTATGTGCCGACCACCCATCCAATGAATACTTCAGGTCATTTCCCAATTGTCTGACTTACAAGACATC TGAGGACTTTGTTGCAAGAGTTAAGGAAGCATTAGCAAATGAACCTCAGCCTCTTACACCCGAGCAAAGATACAACCTCTCATGGGAGGCTGCCACCCAG AGATTTATGCAGTATTCGGAGCTTGATAGAGTCTTGGATTCTGAAAAAGATGTAAAATTGAGCAAAACTAATGGAAAGAGCATCACAAAAGCAGTTTCAA TGCCTAATCTGTCTGAGATGATTGATGGAGGGTTGGCGTTTGCCCACTACTGCCTCACGGGGAATGAGTTTCTTAGGCTGTGTACTGGAGCGATACCTGG GACACGGGACTATGACAAGCAGCATTGTAAAGACCTCCATCTCTTGCCTCCGCAAGTAGAGAATCCCATCTATGGATGGTAA
AA sequence Show only first row Show all	>Potri.016G070200.1 pacid=42809490 polypeptide=Potri.016G070200.1.p locus=Potri.016G070200 ID=Potri.016G070200.1.v4.1 annot-version=v4.1 MEATSTSTRTNSNNTAFSLISRGWKEVRDSADADLQLMRARANSFKNLANSFDREIENFFNSASIASFSVPSPLKPSTSPTEIDFVKKLQPKISEIRRVY SAPEISKKVLEKWGPTAKLGIDLSAIKNAIVAEGEDDFRGGIVGFDRRRKLGFREFWGEGKEEGGGQFGEWEPIRVLKRRFRELEKKSEFGEIFGGFKNS EFVEKLKSSLKAIRKEPQESKEVPPLDVPELLAYLVRQSEPFLDQLGVRKDVCDKIVEGLCRKRKNQFLLPSLSSGKSTLLDENANDELDLRIASVLQST GHCYDGGFWTDSSKHHPSDGKRHVAIVTTASLPWMTGTAVNPLFRAAYLAKSEKQNVTLLVPWLCKSDQELVYPNNLTFTSPEEQENYIRNWLEERVGFK ADFKISFYPGKFSKERRSIISAGDTSKFVPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFLVKHINNLVTRAYCHK VLRLSAATQDLPKSVICNVHGVNPKFLKIGEKVAAERELGQQAFSKGAYFLGKMVWAKGYKELIDLLAKHKNELDGFKLDVFGNGEDANEVQSTAKRLDL NLNFLKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVVCADHPSNEYFRSFPNCLTYKTSEDFVARVKEALANEPQPLTPEQRYNLSWEAATQ RFMQYSELDRVLDSEKDVKLSKTNGKSITKAVSMPNLSEMIDGGLAFAHYCLTGNEFLRLCTGAIPGTRDYDKQHCKDLHLLPPQVENPIYGW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Potri.016G070200 [exp]	0	1	Pt-DGD1.3
AT5G20190			Tetratricopeptide repeat (TPR)...		Potri.018G130100 [exp]	5.29	0.9122
AT1G79160			unknown protein		Potri.011G153600 [exp]	6.32	0.9274
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Potri.001G439600 [exp]	6.48	0.9015
AT1G01490			Heavy metal transport/detoxifi...		Potri.002G163400 [exp]	8.83	0.9073
AT3G52740			unknown protein		Potri.004G203000 [exp]	16.85	0.9066
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Potri.016G083900 [exp]	18.02	0.8964
AT3G02380	CO	ATCOL2, COL2	CONSTANS-like 2 (.1)		Potri.017G107500 [exp]	19.74	0.8910
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Potri.012G031100 [exp]	22.58	0.9042	Pt-SIGE.3
AT1G64500			Glutaredoxin family protein (....		Potri.003G141800 [exp]	30.74	0.9008
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Potri.009G053800 [exp]	30.98	0.8959

Compare expression of checked genes

Potri.016G070200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.