Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66150 778 / 0 TMK1 transmembrane kinase 1 (.1) AT2G01820 772 / 0 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT3G23750 482 / 1e-155 Leucine-rich repeat protein kinase family protein (.1) AT1G24650 458 / 6e-147 Leucine-rich repeat protein kinase family protein (.1) AT2G17220 254 / 1e-75 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT1G55610 267 / 1e-74 BRL1 BRI1 like (.1.2) AT1G68690 258 / 6e-74 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G76370 243 / 4e-72 Protein kinase superfamily protein (.1) AT1G70460 249 / 6e-71 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G23540 248 / 2e-70 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G203500 [exp] 1589 / 0 AT2G01820 528 / 5e-173 Leucine-rich repeat protein kinase family protein (.1) Potri.001G217700 [exp] 1185 / 0 AT1G66150 724 / 0.0 transmembrane kinase 1 (.1) Potri.004G084000 [exp] 811 / 0 AT1G66150 730 / 0.0 transmembrane kinase 1 (.1) Potri.017G134900 [exp] 803 / 0 AT1G66150 1333 / 0.0 transmembrane kinase 1 (.1) Potri.008G137801 [exp] 741 / 0 AT1G66150 1101 / 0.0 transmembrane kinase 1 (.1) Potri.018G141000 [exp] 695 / 0 AT3G23750 650 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G049200 [exp] 691 / 0 AT3G23750 589 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.009G020400 [exp] 688 / 0 AT1G66150 511 / 5e-166 transmembrane kinase 1 (.1) Potri.010G103000 [exp] 541 / 3e-178 AT2G01820 1050 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021275 [exp] 1310 / 0 AT1G66150 804 / 0.0 transmembrane kinase 1 (.1) Lus10016952 [exp] 1296 / 0 AT1G66150 806 / 0.0 transmembrane kinase 1 (.1) Lus10001851 [exp] 936 / 0 AT2G01820 693 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013342 [exp] 935 / 0 AT2G01820 685 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10039038 [exp] 798 / 0 AT1G66150 1356 / 0.0 transmembrane kinase 1 (.1) Lus10027336 [exp] 789 / 0 AT1G66150 1348 / 0.0 transmembrane kinase 1 (.1) Lus10003807 [exp] 740 / 0 AT1G66150 1221 / 0.0 transmembrane kinase 1 (.1) Lus10034432 [exp] 697 / 0 AT1G66150 979 / 0.0 transmembrane kinase 1 (.1) Lus10010472 [exp] 649 / 0 AT1G66150 1067 / 0.0 transmembrane kinase 1 (.1) Lus10031944 [exp] 518 / 7e-169 AT2G01820 1008 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.016G070500.3 pacid=42808985 polypeptide=Potri.016G070500.3.p locus=Potri.016G070500 ID=Potri.016G070500.3.v4.1 annot-version=v4.1 ATGAGAAACCACCACATAAAGCTTGTTTTATCACTCTGTTCTCTTGTTACAGTGGTTTTTAGTGTCACTGACTCCAATGACTTTGCTATTCTCAAAGCAT TTAGAGAAGGGTTAGAGAACCCTGGACTTTTGGAGTGGCCTGCTGATGGTGACGACCCTTGTGGTCAATCTTGGAAACATGTTTTCTGTTCTGGTTCAAG GGTCACTCAAATTCAGGTTCAGAATATGAGCTTGAAAGGTACCTTGCCTCAAAACCTCAACAAGCTTACAAAACTCCAAAGGTTAGGCCTTCAAAGGAAC CAATTCACCGGAGCTTTACCATCACTCGGTGGGTTATCGGAGCTACAGTATGTTTATTTGGATTTCAATCAGTTCGATTCGATTCCTTCTAATTGTTTTG ATGATTTGGTGAGCTTGCAATTCTTGGCATTGGATAGCAATAATTTCAATGCCAGTACAGGGTGGTCATTCCCTGAGGGTTTGCAAGATTCTGCACAATT GACCAATCTTTCTTGTATGTTTTGTAATTTGGCCGGTCCCTTACCTGTTTTTCTAGGGAGCTTGCCATCTCTACAGAGCTTGAAACTTTCAGGCAATAAT TTATCTGGTGAGATTCCTGTAAGCTTCAAAGGAGGCATGTCTTTACAGAATCTATGGTTAAATGATCAGAATGGAGGTGGGTTGAGTGGCACTATTGATG TGGTTACAACAATGGATTCGGTCAATGTTCTATGGCTTCATGGGAACCAGTTCACAGGTACAATTCCAGAGAGCATTGGTAATTTGACTGTTTTGCAGGA TCTCAATCTTAATGGTAATCAACTTGTTGGATTCGTACCGGATAGCCTGGCAAAAATGCCATTGCAGCATTTAGATTTGAACAATAATCAGTTAATGGGT CCGATTCCAAAGTTTAAAGCAACTGAAGTGTCTTGTACTTCAAATGCATTTTGTCAATCCACTCCAGGTGTCCCTTGTGCACCAGAAGTTATGGCACTTC TAGAGTTTCTTGGTTCGCTGAATTACCCTTCAAGACTAGTTTCTTCATGGACCGGTAATAACCCATGTCTATGGCTGGGGTTGGCATGTGATCCCAATAG TAAGGTTAATTCCATTGTTCTGCCTAATCATAATCTTAGCGGTACCTTGAGTCCTTCAGTTGCAAAGCTAGGTTCTCTTTTTCAAGTTAAACTCGCGAGT AACAATCTAGGCGGTCACATTCCAGATAACTGGACTAGCTTGACTTCTTTGAAAACACTGGATCTTAGTGCCAACAACATTTCTCCTCCATTACCAAAAT TCAGTGGCACAGTGAATGTTGTCATTTCAGGCAATCCTTTATTTAATGGTGGTAGTCCGGCCAATCCAGTTCCCTCTCCCGGCAACAATCCATCATCCGG AAGTTCAGATTCTCCACCCAGCAACCCCTCATCACCAAACAAAGGCATAGGTTCTAGTCCCATGAATTCTTCAGTATCAACAAAACCCAAAATGTCTACT TTAGTTGCAATTATAGCCCCTGTTGCAAGTGTTGCATTTATTGCTATTCTGGTCATTCCTCTATCCATCTATTGTTGCAAGAAGAGGAAAGATACCTTCC AGGCTCCAAGTTCCCTCGTCATTCATCCAAGAGATCCATCAGATTCAGACAACACAGTTAAGGTTGTGGTTTCCCATGACACCAATGGAAGCGCTTCTAC AATAACAGGGAATGGTTCTGCAAGCAGAACCAGTAGTGGCATTGGGGAGTCTCATGTTTTTGAAGCAGGAAATCTGGTTATATCAGTTCAAGTTCTTCGA AATGTGACTAAGAATTTTGCCTCGGAGAATGAGCTTGGTCGAGGTGGTTTTGGAGTGGTTTATAAAGGAGAACTTGATGATGGAACAAAAATAGCTGTAA AAAGAATGGAGGCTGGCGTGATTAGCAGCAAAGGCTTGGATGAATTCCAGGCTGAGATTGCTGTTCTTTCAAAGGTACGACACCGGCATTTGGTATCACT TTTGGGTTACTCGATTGAAGGCTGTGAAAGAATCCTTGTTTATGAATACGTGCCTCAAGGAGCTCTAAGCAGGCATCTTTTTCATTGGAAGAGCTTGGAG TTGGAGCCTCTTTCTTGGAAGCGGAGGCTGAATATTGCATTGGATGTTGCTAGAGGAATGGAGTATCTTCATAGCCTAGCTCACCAGAGCTTCATACACA GAGATCTTAAATCTTCAAACATCTTACTCGGAGATGATTTCAGAGCTAAAGTTTCAGATTTTGGATTGGTGAAACTTGCTCCTGATGGAGAGAAATCTGT GGTGACCAGGCTTGCTGGGACCTTTGGATACTTAGCACCTGAATATGCTGTGACGGGGAAAATCACAACCAAGGCTGATGTCTTTAGTTTTGGGGTTGTG TTAATGGAGCTATTGACTGGGTTGATGGCGCTCGACGATGACAGGCCTGAGGAAAGCCAGTACTTGGCTGCATGGTTCTGGCAGATCAAATCAGATAAGC AGAAACTCAGGGCTGCTATTGACCCTGCCCTTGATGTGAAAGATGAAACGTTTGAGAGTATCTCCATCGTTGCTGAACTGGCTGGACATTGCACGGCAAG GGAGCCCAACCAAAGACCAGATATGGGACATGCTGTGAATGTGCTGGCACCACTTGTTGAGATATGGAAACCTTTGGATGACGATACTGAAGAATATTGT GGCATTGATTACAGCCTCCCTCTTAACCAGATGGTGAAGGGCTGGCAGGAAGCAGAGGGAAAGGACTTAAGTTATGTGGACTTAAAAGATAGCAAGAGTA GTATCCCAGCAAGACCGACTGGTTTTGCAGAATCTTTCACTTCTGCTGATGGGCGGTAA
AA sequence Show only first row Show all	>Potri.016G070500.3 pacid=42808985 polypeptide=Potri.016G070500.3.p locus=Potri.016G070500 ID=Potri.016G070500.3.v4.1 annot-version=v4.1 MRNHHIKLVLSLCSLVTVVFSVTDSNDFAILKAFREGLENPGLLEWPADGDDPCGQSWKHVFCSGSRVTQIQVQNMSLKGTLPQNLNKLTKLQRLGLQRN QFTGALPSLGGLSELQYVYLDFNQFDSIPSNCFDDLVSLQFLALDSNNFNASTGWSFPEGLQDSAQLTNLSCMFCNLAGPLPVFLGSLPSLQSLKLSGNN LSGEIPVSFKGGMSLQNLWLNDQNGGGLSGTIDVVTTMDSVNVLWLHGNQFTGTIPESIGNLTVLQDLNLNGNQLVGFVPDSLAKMPLQHLDLNNNQLMG PIPKFKATEVSCTSNAFCQSTPGVPCAPEVMALLEFLGSLNYPSRLVSSWTGNNPCLWLGLACDPNSKVNSIVLPNHNLSGTLSPSVAKLGSLFQVKLAS NNLGGHIPDNWTSLTSLKTLDLSANNISPPLPKFSGTVNVVISGNPLFNGGSPANPVPSPGNNPSSGSSDSPPSNPSSPNKGIGSSPMNSSVSTKPKMST LVAIIAPVASVAFIAILVIPLSIYCCKKRKDTFQAPSSLVIHPRDPSDSDNTVKVVVSHDTNGSASTITGNGSASRTSSGIGESHVFEAGNLVISVQVLR NVTKNFASENELGRGGFGVVYKGELDDGTKIAVKRMEAGVISSKGLDEFQAEIAVLSKVRHRHLVSLLGYSIEGCERILVYEYVPQGALSRHLFHWKSLE LEPLSWKRRLNIALDVARGMEYLHSLAHQSFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVTGKITTKADVFSFGVV LMELLTGLMALDDDRPEESQYLAAWFWQIKSDKQKLRAAIDPALDVKDETFESISIVAELAGHCTAREPNQRPDMGHAVNVLAPLVEIWKPLDDDTEEYC GIDYSLPLNQMVKGWQEAEGKDLSYVDLKDSKSSIPARPTGFAESFTSADGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.016G070500 [exp]	0	1
AT4G20940			Leucine-rich receptor-like pro...		Potri.001G465800 [exp]	1.41	0.8895
AT4G31890			ARM repeat superfamily protein...		Potri.006G263100 [exp]	2.00	0.8721
AT3G16300			Uncharacterised protein family...		Potri.003G050400 [exp]	9.94	0.8147
AT4G04470		PMP22	Peroxisomal membrane 22 kDa (M...		Potri.004G008700 [exp]	10.81	0.7723
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Potri.009G058600 [exp]	10.95	0.8119	Pt-SMT.2
AT5G25510			Protein phosphatase 2A regulat...		Potri.018G073925 [exp]	11.83	0.8429
AT5G28150			Plant protein of unknown funct...		Potri.005G050900 [exp]	12.24	0.8195
AT1G73620			Pathogenesis-related thaumatin...		Potri.012G047800 [exp]	14.14	0.8183
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Potri.011G010500 [exp]	15.42	0.8014
AT5G53880			unknown protein		Potri.001G398700 [exp]	15.58	0.8176

Compare expression of checked genes

Potri.016G070500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.