Plant FIBer expression Database

Potri.016G070800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G31400 330 / 1e-111 CTF7 damaged DNA binding;DNA-directed DNA polymerases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021277
[exp]
369 / 2e-127 AT4G31400 296 / 4e-99 damaged DNA binding;DNA-directed DNA polymerases (.1)
Lus10016954
[exp]
303 / 1e-101 AT4G31400 237 / 2e-76 damaged DNA binding;DNA-directed DNA polymerases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0361 C2H2-zf PF13878 zf-C2H2_3 zinc-finger of acetyl-transferase ESCO
CL0257 Acetyltrans PF13880 Acetyltransf_13 ESCO1/2 acetyl-transferase
Representative CDS sequence
>Potri.016G070800.1 pacid=42809848 polypeptide=Potri.016G070800.1.p locus=Potri.016G070800 ID=Potri.016G070800.1.v4.1 annot-version=v4.1
ATGCAATCCAAAATAAGCTCCTTCTTCAAGTCCCCTTCTTCTTCTTCTTCTCCGCCAAAATGCCTCCAAGAAGACCCACCTTCTTTTTCGGACGTTGACT
TGGCTATATGGCAGAATTCCCAGCACCAATTTGTCAATACTTACGCACGTCGAGCCGCCCCAAAATTAATTCTTGGGGACCAGAGGAGTGAAGGAAATAA
AGGGCAACGGAGTGAGGTGTTGCCTAAACCAATATCAAAAGATCCGTGTTCGAAACCAGAAACAGAGGCTTGTGGGAAAGTGCTTAACAAGAAGAGAAGC
TATGCACAGTTTCATCTAGACTTAGGTCAATCTGATTTCAATCTCCGTGCATGTTCAACATGTGGGGTTAAATATGCACCGGGTGATGAAGGAGATGAGA
AGGAACATAAAATCTTTCACAAGAATTACACTCATGGAATTCAATTCAAGGTTTTTCGGAGCGAAAGGGTTGTGCATATGCCTTGTAGTGAAGCGGGGCG
TATTGTTTTGGTGCTGGATTCTGATCCTCCTGCACTGAGAAATAAGCTACAGGAGGTTATACAGATGATGGAGATTGAGCTTGGAGATGGATGGATTTTT
CATAAGCTTTGTAAGGTATATGTATTTGTTTCTTCCCAGAGAGTAGCTGGTTGTCTAGTTGCTGAACCAATAAAAGAAGCATTCAAAGTTCTTACATGTT
CGGTGGATGAAAGACCTAAATGCGCTGCTAAAAAGAATTCAAGACCAAACTCCACAACTCTCCAATTTGGTGAAGTCATCTTACAAAGGGAAGCCATGAG
AAAAGTTACTGCAGTTGATTCTCTTAACGTATTAAATGGGAACCACAATGGAGCTGTTGTTTGTGAAGAGGAAGCTGTACCTGCTCTCTGTGGCATCAGA
GCAATCTGGGTTACTCCCTCTAACAGAAGAAAACGCATTGCAAGCCAATTACTGGATGCTGCGAGGAGAAGTTTTTGCATGGGTGTTGTTCTCGAACAAT
CTCAGTTGGCATTCTCTCCACCAACCTCAGCTGGGAAGGCATTGGCATCTAGTTATGCTGGCACTACATCATTCTTGGCGTACAAACCTAAAAATGTGGG
CAGTTAA
AA sequence
>Potri.016G070800.1 pacid=42809848 polypeptide=Potri.016G070800.1.p locus=Potri.016G070800 ID=Potri.016G070800.1.v4.1 annot-version=v4.1
MQSKISSFFKSPSSSSSPPKCLQEDPPSFSDVDLAIWQNSQHQFVNTYARRAAPKLILGDQRSEGNKGQRSEVLPKPISKDPCSKPETEACGKVLNKKRS
YAQFHLDLGQSDFNLRACSTCGVKYAPGDEGDEKEHKIFHKNYTHGIQFKVFRSERVVHMPCSEAGRIVLVLDSDPPALRNKLQEVIQMMEIELGDGWIF
HKLCKVYVFVSSQRVAGCLVAEPIKEAFKVLTCSVDERPKCAAKKNSRPNSTTLQFGEVILQREAMRKVTAVDSLNVLNGNHNGAVVCEEEAVPALCGIR
AIWVTPSNRRKRIASQLLDAARRSFCMGVVLEQSQLAFSPPTSAGKALASSYAGTTSFLAYKPKNVGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G31400 CTF7 damaged DNA binding;DNA-direct... Potri.016G070800
[exp]
0 1
AT4G33400 Vacuolar import/degradation, V... Potri.002G126500
[exp]
4.00 0.9135
AT5G27670 HTA7 histone H2A 7 (.1) Potri.005G026500
[exp]
5.29 0.9128 HTA914
AT1G54385 ARM repeat superfamily protein... Potri.013G058700
[exp]
5.74 0.9108
AT3G27060 ATTSO2, TSO2 TSO MEANING 'UGLY' IN CHINESE ... Potri.017G063900
[exp]
6.00 0.9059
AT5G65360 Histone superfamily protein (.... Potri.014G096900
[exp]
8.48 0.9077 HTR906
AT5G65360 Histone superfamily protein (.... Potri.005G233900
[exp]
10.81 0.8964
AT5G20850 ATRAD51 RAS associated with diabetes p... Potri.006G135200
[exp]
11.83 0.9065
AT3G07800 Thymidine kinase (.1) Potri.002G222300
[exp]
12.32 0.8779
AT5G41880 POLA4, POLA3 DNA primases;DNA primases (.1) Potri.003G104700
[exp]
12.40 0.9032
AT1G08880 HTA5 ,G-H2AX ,G... histone H2A 5, gamma histone v... Potri.004G031300
[exp]
12.40 0.9055

Potri.016G070800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.