Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52490 785 / 0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57710 331 / 5e-99 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G29920 301 / 7e-88 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57130 282 / 5e-81 Clp amino terminal domain-containing protein (.1) AT4G30350 214 / 7e-58 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT2G29970 149 / 1e-36 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT2G40130 130 / 1e-31 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G07200 120 / 8e-28 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G74310 80 / 4e-15 HOT1, ATHSP101 heat shock protein 101 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G204500 [exp] 1300 / 0 AT3G52490 852 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G241600 [exp] 724 / 0 AT3G52490 641 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G017600 [exp] 723 / 0 AT3G52490 635 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G140900 [exp] 310 / 2e-91 AT5G57130 751 / 0.0 Clp amino terminal domain-containing protein (.1) Potri.006G073800 [exp] 301 / 4e-88 AT4G29920 693 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G097300 [exp] 298 / 8e-87 AT5G57710 998 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G175200 [exp] 244 / 1e-67 AT5G57710 913 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G069100 [exp] 153 / 6e-38 AT2G29970 610 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G188200 [exp] 125 / 6e-29 AT1G07200 624 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021291 [exp] 694 / 0 AT3G52490 690 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016966 [exp] 604 / 0 AT3G52490 606 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028849 [exp] 338 / 2e-103 AT3G52490 498 / 5e-165 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008970 [exp] 343 / 6e-103 AT3G52490 460 / 1e-147 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019984 [exp] 320 / 5e-95 AT5G57710 912 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015511 [exp] 303 / 2e-88 AT5G57710 899 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023201 [exp] 190 / 3e-50 AT5G57710 404 / 1e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038320 [exp] 124 / 7e-29 AT2G29970 696 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10020886 [exp] 122 / 3e-28 AT5G57710 226 / 2e-61 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10040206 [exp] 120 / 1e-27 AT2G40130 569 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02861 [poplar] [flax] Clp_N Clp amino terminal domain, pathogenicity island component
Representative CDS sequence Show only first row Show all	>Potri.016G071800.1 pacid=42809017 polypeptide=Potri.016G071800.1.p locus=Potri.016G071800 ID=Potri.016G071800.1.v4.1 annot-version=v4.1 ATGAGAGCAGGAGGTTGCACAGTGCAACAAGCTCTAACAGCAGAGGCAGCAAGTGTTATTAAACAAGCAGTAACTCTTGCTAGAAGGAGAGGCCATGCCC AAGTCACTCCTCTCCATGTTGCTAATACCATGCTTTCTGCCTCCACTGGCCTACTGAGAACAGCTTGCCTTCAGTCACACTCTCACCCTCTTCAGTGCAA AGCCCTAGAGCTTTGCTTCAATGTCGCGCTTAATCGTCTCCCAACATCAACTTCAAGCCCCATGATAGGTACTCCCTCTCAACAGTTCCCTTCAATCTCT AATGCCTTGGTCGCAGCCTTTAAGCGCGCTCAGGCTCACCAGCGGCGTGGCTCTATTGAGAACCAGCAGCAACCTCTCCTTGCAGTGAAGATAGAGTTAG AGCAGCTGATGATATCCATTTTAGATGATCCTAGTGTTAGTAGAGTCATGAGAGAAGCTGGTTTCTCCAGTACTCAAGTGAAAAGCAATGTTGAGGAAGC TGTTTCCCTAGAAATATGTTCACAAAGTGTTCCTTCTGTGAGTATCAAGTCCAACGAAAGCAATGGTTTAGTCCATCCAGAGTCTCCACCTTGGAGTCAA GTTGGAGCAAAAGCAGCAGTTTTAGATCCAATTAAAAATGAAGATGTGATGTGTGTTATAGAGAATTTAATGAATAAAAGGAGGAGAAGTTTTGTTATTG TAGGGGAATCTCTGGCAAGCATTGAAGTTGTAGTTAAAGGAGTCAAGGACAAAGTTCAAAAGGGAGATGTTCCTGAGGGCTTGAGGGAAGTGAAGTTCTT ACCAATTCCAGTTTCCTCTTTTGGCAGTTTCTCTAGGGTAGAGGTAGAACATAAACTTGAGGAGCTTAAAGGCCATGTGAGAAGCTACATGGGCAAAGGA GTGGTTTTGAATTTGGGAGATCTTAAATGGGCTATTGAGAATAGGGATACTAGTTCATCAAGTCATGAGCAAGGGAGCTGCTATTTCTGTCCATTGGTAT ACCTGATCGTAGAACTTGGCAAATTTGCTTGTGCAATTGGAGATAACAACGGAAGATTTTGGCTTATGGGGATTGCCACTTTCCAAACTTACATGAAGTA TAAATCAGACCATCCACCGGGAGATACTGTTTTGGGTCTCCATCCACTTACAATTCCAGCCGGCAGCTTACGCTTGAGTCTCATCAGTGACAGTGATCTA CTACGTCAGTCGACAAGCAACAAAGCTGAAAATGGGTGTAGAAGCTGGATTATACTTGAAGGTGGGGAGGACAAACAACTCACTTCTTGTTCTAATTATT CAGCAAAGTTTGAGACTGAAGCTCGACGCTTACCAAATAGTACCTGTAATAGTGACTCAACTTCTACACTTCCTGCATGGCTTCAAAAATACAAAAATGA GAAAAAAGTACAAAATAGTGATAATCAGGATTCTATGCCAATCAAAGATCTTTGCAGAAAATGGAACTCATTTTGCGGTTCAATCCACCAACAAAACTAC TCTTCTGAGGAAACCCTCACGTTTTCTTCTGTATCACCTTCTTCTTCCACTTCATATGACCATCAATACCCTAATTTGTACCGAAACCAAAATGAATGGC CCATTGTTGAACCCCAGCAGTCATCTAGGGACAACCATTTCTGGATCGGTACAGAGGCTATCAACAAGTGCAGCATTGAACCAAGTTTGAGGAAGTACAT TCCAGAGCATAAAGATCATACCAAACAACTACCATTTTCATCAAATACTAATTCTACTCCGAACTCAGCTTCCTCAAGTGATGTCATCGAAATGGAGCAT CTCCACAAGTTCAAGGAGCTGAATGCTGAGAACTTGAAAACCCTATGCAATGCATTGGAGAAAAAAGTGCCGTGGCAGAAAGATATAATCCCTGAAATAG CAAGCACTATCTTGCAATGCCGGTCTGGCATGGCAAGAAGAAAGGGGAAGGTAAAAAACAGTGTGGCCAAGGAAGAAACTTGGTTGTTCTTTCAAGGAGT AGATATGGAAGATAAAGAGAAGATAGCTAAAGAATTGGCTAGGCTAGTTTTTGGCTCCCATGAAAGCTTCATTTCGATTTCTTTAAGCAGTTTTTCCTCT ACAAGAGCAGACTCCACCGAAGATTGTAGAAACAAAAGAACAAGAGATGAACAAAGTTGCAGCTACATCGAGAGATTTTCTGACGCGGTATCAAGCAATC CACATAGAGTTTTCTTAGTGGAAGATGTCGAGCAAGCAGATTTTTTCTCTCAAATTCGTTTCAAAAGGGCTATTGAAAAAGGAAGAATAACCAATTACAA TGGTCAAGAAGTTGGCCTTAGTGATGCTATCATAATTTTGAGCTGTGAAAGCTTTAGCTCAAGATCCAGAGCCTGCTCTCCTCCAATCAAGCAGAGAACA GATGGGTCACATGAAGAAGAGAACAGCGCTGGTGCTACATTAATGGAGGGCACAAGCCCTTGTGTTTCTCTGGATTTGAATATTTCCATTGACGATGATA GCGTGGAAGATCAGTCAATCGATGACATTGGCCTTCTTGAATCCGTTGATAGACGGATTATCTTCAAAATTCAAGACTTTTGA
AA sequence Show only first row Show all	>Potri.016G071800.1 pacid=42809017 polypeptide=Potri.016G071800.1.p locus=Potri.016G071800 ID=Potri.016G071800.1.v4.1 annot-version=v4.1 MRAGGCTVQQALTAEAASVIKQAVTLARRRGHAQVTPLHVANTMLSASTGLLRTACLQSHSHPLQCKALELCFNVALNRLPTSTSSPMIGTPSQQFPSIS NALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLMISILDDPSVSRVMREAGFSSTQVKSNVEEAVSLEICSQSVPSVSIKSNESNGLVHPESPPWSQ VGAKAAVLDPIKNEDVMCVIENLMNKRRRSFVIVGESLASIEVVVKGVKDKVQKGDVPEGLREVKFLPIPVSSFGSFSRVEVEHKLEELKGHVRSYMGKG VVLNLGDLKWAIENRDTSSSSHEQGSCYFCPLVYLIVELGKFACAIGDNNGRFWLMGIATFQTYMKYKSDHPPGDTVLGLHPLTIPAGSLRLSLISDSDL LRQSTSNKAENGCRSWIILEGGEDKQLTSCSNYSAKFETEARRLPNSTCNSDSTSTLPAWLQKYKNEKKVQNSDNQDSMPIKDLCRKWNSFCGSIHQQNY SSEETLTFSSVSPSSSTSYDHQYPNLYRNQNEWPIVEPQQSSRDNHFWIGTEAINKCSIEPSLRKYIPEHKDHTKQLPFSSNTNSTPNSASSSDVIEMEH LHKFKELNAENLKTLCNALEKKVPWQKDIIPEIASTILQCRSGMARRKGKVKNSVAKEETWLFFQGVDMEDKEKIAKELARLVFGSHESFISISLSSFSS TRADSTEDCRNKRTRDEQSCSYIERFSDAVSSNPHRVFLVEDVEQADFFSQIRFKRAIEKGRITNYNGQEVGLSDAIIILSCESFSSRSRACSPPIKQRT DGSHEEENSAGATLMEGTSPCVSLDLNISIDDDSVEDQSIDDIGLLESVDRRIIFKIQDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52490			Double Clp-N motif-containing ...		Potri.016G071800 [exp]	0	1
AT2G20560			DNAJ heat shock family protein...		Potri.007G136400 [exp]	1.73	0.8807
AT3G52490			Double Clp-N motif-containing ...		Potri.006G204500 [exp]	1.73	0.9250
AT1G65810			P-loop containing nucleoside t...		Potri.008G143450 [exp]	6.48	0.8685
AT5G17760			P-loop containing nucleoside t...		Potri.007G020800 [exp]	7.07	0.8202
AT4G25410	bHLH	bHLH126	basic helix-loop-helix (bHLH) ...		Potri.012G132100 [exp]	10.29	0.8813
AT5G17980			C2 calcium/lipid-binding plant...		Potri.013G055500 [exp]	11.22	0.8675
AT1G29160	DOF	AtDof1. 5	Dof-type zinc finger DNA-bindi...		Potri.004G056900 [exp]	11.61	0.8404	Pt-DOF2.2
AT5G19875			unknown protein		Potri.001G009200 [exp]	13.78	0.8711
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Potri.015G028000 [exp]	14.49	0.8702
AT2G26520			unknown protein		Potri.009G106300 [exp]	17.14	0.8233

Compare expression of checked genes

Potri.016G071800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.