Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52500 491 / 7e-172 Eukaryotic aspartyl protease family protein (.1) AT5G45120 176 / 1e-49 Eukaryotic aspartyl protease family protein (.1) AT2G03200 164 / 1e-45 Eukaryotic aspartyl protease family protein (.1) AT3G25700 161 / 2e-44 Eukaryotic aspartyl protease family protein (.1.2) AT2G42980 149 / 1e-39 Eukaryotic aspartyl protease family protein (.1) AT3G59080 139 / 5e-36 Eukaryotic aspartyl protease family protein (.1.2) AT4G16563 121 / 8e-30 Eukaryotic aspartyl protease family protein (.1) AT1G01300 120 / 1e-29 Eukaryotic aspartyl protease family protein (.1) AT1G25510 120 / 1e-29 Eukaryotic aspartyl protease family protein (.1) AT1G66180 115 / 4e-28 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G204700 [exp] 753 / 0 AT3G52500 504 / 5e-177 Eukaryotic aspartyl protease family protein (.1) Potri.009G162400 [exp] 427 / 5e-147 AT3G52500 396 / 1e-134 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 167 / 2e-46 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 165 / 5e-46 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.012G118000 [exp] 165 / 1e-45 AT5G45120 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G204600 [exp] 166 / 2e-45 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.001G158600 [exp] 159 / 3e-43 AT4G16563 494 / 5e-172 Eukaryotic aspartyl protease family protein (.1) Potri.003G076300 [exp] 157 / 9e-43 AT4G16563 484 / 2e-168 Eukaryotic aspartyl protease family protein (.1) Potri.015G113100 [exp] 155 / 5e-42 AT5G45120 588 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004204 [exp] 489 / 4e-171 AT3G52500 457 / 2e-158 Eukaryotic aspartyl protease family protein (.1) Lus10029408 [exp] 485 / 1e-169 AT3G52500 466 / 5e-162 Eukaryotic aspartyl protease family protein (.1) Lus10016967 [exp] 435 / 2e-150 AT3G52500 330 / 2e-109 Eukaryotic aspartyl protease family protein (.1) Lus10021293 [exp] 387 / 1e-132 AT3G52500 369 / 1e-125 Eukaryotic aspartyl protease family protein (.1) Lus10013325 [exp] 179 / 7e-53 AT3G52500 159 / 2e-45 Eukaryotic aspartyl protease family protein (.1) Lus10005212 [exp] 166 / 5e-48 AT3G52500 145 / 2e-40 Eukaryotic aspartyl protease family protein (.1) Lus10007466 [exp] 170 / 3e-47 AT4G16563 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10028941 [exp] 165 / 4e-45 AT4G16563 489 / 2e-169 Eukaryotic aspartyl protease family protein (.1) Lus10005211 [exp] 153 / 5e-44 AT3G52500 179 / 2e-54 Eukaryotic aspartyl protease family protein (.1) Lus10018286 [exp] 157 / 3e-42 AT5G45120 520 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Potri.016G071900.1 pacid=42810616 polypeptide=Potri.016G071900.1.p locus=Potri.016G071900 ID=Potri.016G071900.1.v4.1 annot-version=v4.1 ATGGCTTCTTCTCTGCTTCTCTTTCTCCTCTCTTTTCTTATCTTAATCACTTCATCAAAATCAACAACCATTACCATCCCTCTATCAGCTCCCAGCTTCA ACAAACTGATTGTGTCCTCAAAAAAGCCATGGGGTTCACTCAATCACCTCGCTTCTCTATCTCTCTCAAGAGCCCACCACATCAAGTCGCCAAAAACCAA TTTTTCTCTCATCAAGACCCCTCTTTTTCCACGTAGCTATGGTGGCTACTCAATATCTCTCAACTTTGGTACTCCTCCGCAGACAACCAAATTTGTCATG GACACTGGTTCTAGTCTTGTTTGGTTTCCTTGTACCTCTCGCTATCTTTGCTCAGAATGTAACTTTCCTAACATTAAAAAAACAGGAATCCCAACATTTT TACCAAAACTATCATCCTCTTCAAAGCTTATTGGTTGCAAGAATCCCAGATGCTCTATGATTTTTGGCCCCGAGATTCAGTCCAAATGCCAAGAATGTGA CTCCACTGCCCAAAACTGCACTCAAACTTGCCCACCTTATGTAATACAATATGGTTCAGGCTCCACAGCTGGACTTCTACTATCTGAAACTCTCGATTTC CCAAACAAGAAAACCATACCCGATTTTCTTGTCGGGTGCTCCATTTTCTCCATCAAACAACCCGAAGGGATTGCCGGTTTCGGTCGGAGCCCAGAATCAC TCCCTTCACAATTGGGTCTCAAGAAATTCTCTTACTGTTTAGTATCTCACGCTTTTGATGACACTCCAACAAGCAGTGACCTTGTTTTGGATACCGGGTC GGGTTCGGGTGTTACCAAGACCGCAGGGCTTAGCCACACACCCTTTCTGAAGAATCCAACCACTGCATTTCGAGATTATTACTATGTATTGCTGCGTAAC ATTGTAATAGGGGACACACATGTTAAGGTGCCGTACAAGTTTTTGGTGCCAGGAACAGATGGAAATGGAGGGACTATTGTGGATTCAGGAACAACATTCA CATTCATGGAGAACCCAGTTTATGAGTTGGTGGCTAAAGAATTTGAGAAGCAAATGGCCCATTATACAGTAGCCACTGAGATTCAAAATCTGACCGGTTT AAGGCCTTGTTACAATATTTCTGGTGAGAAATCACTTTCTGTCCCGGATTTGATTTTTCAGTTCAAGGGTGGTGCTAAGATGGCATTACCTTTGTCAAAT TATTTTTCGATTGTTGATTCGGGAGTTATATGCTTGACAATCGTGAGTGATAATGTAGCTGGTCCGGGACTTGGAGGTGGACCGGCCATTATTTTGGGGA ATTATCAGCAGAGGAATTTTTATGTGGAGTTCGATTTGGAGAATGAGAAATTTGGGTTCAAGCAACAGAGTTGTGCATGA
AA sequence Show only first row Show all	>Potri.016G071900.1 pacid=42810616 polypeptide=Potri.016G071900.1.p locus=Potri.016G071900 ID=Potri.016G071900.1.v4.1 annot-version=v4.1 MASSLLLFLLSFLILITSSKSTTITIPLSAPSFNKLIVSSKKPWGSLNHLASLSLSRAHHIKSPKTNFSLIKTPLFPRSYGGYSISLNFGTPPQTTKFVM DTGSSLVWFPCTSRYLCSECNFPNIKKTGIPTFLPKLSSSSKLIGCKNPRCSMIFGPEIQSKCQECDSTAQNCTQTCPPYVIQYGSGSTAGLLLSETLDF PNKKTIPDFLVGCSIFSIKQPEGIAGFGRSPESLPSQLGLKKFSYCLVSHAFDDTPTSSDLVLDTGSGSGVTKTAGLSHTPFLKNPTTAFRDYYYVLLRN IVIGDTHVKVPYKFLVPGTDGNGGTIVDSGTTFTFMENPVYELVAKEFEKQMAHYTVATEIQNLTGLRPCYNISGEKSLSVPDLIFQFKGGAKMALPLSN YFSIVDSGVICLTIVSDNVAGPGLGGGPAIILGNYQQRNFYVEFDLENEKFGFKQQSCA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52500			Eukaryotic aspartyl protease f...		Potri.016G071900 [exp]	0	1
AT5G45540			Protein of unknown function (D...		Potri.006G010900 [exp]	5.38	0.8589
AT2G44940	AP2_ERF		Integrase-type DNA-binding sup...		Potri.014G055700 [exp]	6.63	0.8495
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.001G162600 [exp]	10.81	0.8079
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.001G162500 [exp]	12.64	0.8058	PME2.16
AT1G76160		SKS5	SKU5 similar 5 (.1)		Potri.002G227600 [exp]	13.41	0.8431
AT3G07320			O-Glycosyl hydrolases family 1...		Potri.002G247800 [exp]	15.49	0.7977	SGGN1.1
AT5G16340			AMP-dependent synthetase and l...		Potri.004G000300 [exp]	19.28	0.8279
AT5G53200	MYB	TRY	TRIPTYCHON, Homeodomain-like s...		Potri.015G022000 [exp]	19.79	0.8170	MYB179
AT1G49660		ATCXE5	carboxyesterase 5 (.1)		Potri.009G103800 [exp]	27.12	0.8315
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.001G167900 [exp]	30.74	0.7742

Compare expression of checked genes

Potri.016G071900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.