Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-BAS1.2,PtrcPrx2-cysA
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06290 390 / 3e-138 2CPB, 2-CysPrxB ,2-Cys Prx B 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) AT3G11630 385 / 3e-136 Thioredoxin superfamily protein (.1) AT1G48130 95 / 2e-23 ATPER1 1-cysteine peroxiredoxin 1 (.1) AT3G26060 78 / 5e-17 ATPRXQ ,ATPRX Q peroxiredoxin Q, Thioredoxin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G204900 [exp] 465 / 6e-168 AT5G06290 385 / 2e-136 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Potri.008G099900 [exp] 92 / 2e-21 AT1G48130 322 / 2e-111 1-cysteine peroxiredoxin 1 (.1) Potri.018G063300 [exp] 79 / 3e-17 AT3G26060 275 / 1e-94 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Potri.006G137500 [exp] 76 / 3e-16 AT3G26060 286 / 5e-99 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016969 [exp] 421 / 2e-150 AT5G06290 403 / 2e-143 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Lus10021295 [exp] 417 / 8e-149 AT5G06290 404 / 6e-144 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Lus10018342 [exp] 94 / 4e-23 AT1G48130 338 / 2e-119 1-cysteine peroxiredoxin 1 (.1) Lus10017112 [exp] 94 / 5e-23 AT1G48130 335 / 3e-118 1-cysteine peroxiredoxin 1 (.1) Lus10033424 [exp] 77 / 1e-16 AT3G26060 278 / 1e-95 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Lus10034892 [exp] 75 / 7e-16 AT3G26060 281 / 6e-97 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Lus10004221 [exp] 72 / 4e-14 AT5G27720 182 / 2e-57 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF08534 [poplar] [flax] Redoxin Redoxin CL0172 [poplar] [flax] PF10417 [poplar] [flax] 1-cysPrx_C C-terminal domain of 1-Cys peroxiredoxin
Representative CDS sequence Show only first row Show all	>Potri.016G072100.2 pacid=42809567 polypeptide=Potri.016G072100.2.p locus=Potri.016G072100 ID=Potri.016G072100.2.v4.1 annot-version=v4.1 ATGGCCTGCTCAGCTACCTCCACCACTCTCATCTCCTCTATCGCCGCCGCCGCCACCGCCACCACCACCAAATCCATGGCCTTTCCTATCTCTAAAAACA TAACTCTCCCCAACTCATTTTTTGGCACTCGCAAATCCTTCCAATCTCGCGTCCCTCGTTCCATTTCCTTGACTCGTGGCTCTCATTCTAGAAGCACCTT CGTTGTCAAAGCCTCTAGCGAACTTCCATTGGTCGGAAACATAGCACCGGATTTCGAGGCGGAGGCTGTCTTCGATCAAGAGTTCATTAATGTTAAACTG TCTGATTATATTGGGAAGAAATATGTGATTCTATTTTTCTATCCATTGGACTTCACATTTGTTTGTCCCACAGAAATCACTGCTTTTAGTGACCGTCATG AGGAATTTGAGCAGATAAACACAGAAGTGTTGGGTGTTTCAATCGACAGTGTGTTCTCGCACCTTGCCTGGGTCCAAACAGATAGAAAGTCTGGTGGGCT TGGAGATTTGAAGTATCCTTTGATTTCTGATGTCACCAAATCCATTTCAAAATCTTATGGAGTGCTAATTCCTGATCAGGGAGTTGCTCTGAGAGGACTT TTCATCATTGATAAAGAAGGAGTCATCCAACATTCCACCATTAACAACCTTGCCATTGGGCGTAGTGTTGACGAGACGAAGAGGACACTCCAGGCCTTGC AGTATGTGCAAGAAAATCCAGATGAAGTTTGCCCAGCTGGGTGGAAGCCTGGTGAGAAGTCCATGAAGCCTGATCCAAAGCTGAGCAAGGATTACTTTGC TGCCATATAG
AA sequence Show only first row Show all	>Potri.016G072100.2 pacid=42809567 polypeptide=Potri.016G072100.2.p locus=Potri.016G072100 ID=Potri.016G072100.2.v4.1 annot-version=v4.1 MACSATSTTLISSIAAAATATTTKSMAFPISKNITLPNSFFGTRKSFQSRVPRSISLTRGSHSRSTFVVKASSELPLVGNIAPDFEAEAVFDQEFINVKL SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHEEFEQINTEVLGVSIDSVFSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSYGVLIPDQGVALRGL FIIDKEGVIQHSTINNLAIGRSVDETKRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKLSKDYFAAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06290		2CPB, 2-CysPrxB...	2-CYS PEROXIREDOXIN B, 2-cyste...		Potri.016G072100 [exp]	0	1	Pt-BAS1.2,PtrcPrx2-cysA
AT5G40950		RPL27	ribosomal protein large subuni...		Potri.001G329500 [exp]	1.00	0.9876	Pt-RPL27.5
AT5G14910			Heavy metal transport/detoxifi...		Potri.001G350500 [exp]	2.44	0.9851
AT1G21350			Thioredoxin superfamily protei...		Potri.002G071000 [exp]	2.82	0.9815
AT1G55670		PSAG	photosystem I subunit G (.1)		Potri.001G471900 [exp]	3.87	0.9843	Pt-PSAG.1
AT2G28190		CZSOD2, CSD2	copper/zinc superoxide dismuta...		Potri.009G163200 [exp]	4.24	0.9836
AT4G02530			chloroplast thylakoid lumen pr...		Potri.006G067600 [exp]	4.58	0.9816
AT5G65220			Ribosomal L29 family protein ...		Potri.007G093700 [exp]	4.89	0.9850
AT4G12800		PSAL	photosystem I subunit l (.1)		Potri.014G175600 [exp]	4.89	0.9846	PSAL.2
AT3G23760			unknown protein		Potri.015G108200 [exp]	5.47	0.9787
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Potri.010G150300 [exp]	5.47	0.9812

Compare expression of checked genes

Potri.016G072100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.