Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36000 279 / 3e-92 EMB3114 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) AT2G34620 174 / 5e-52 Mitochondrial transcription termination factor family protein (.1) AT2G03050 162 / 2e-47 SOLDAT10, EMB93 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) AT3G18870 128 / 2e-34 Mitochondrial transcription termination factor family protein (.1) AT2G21710 91 / 7e-20 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) AT4G14605 90 / 1e-19 Mitochondrial transcription termination factor family protein (.1) AT5G55580 89 / 3e-19 Mitochondrial transcription termination factor family protein (.1) AT1G78930 88 / 5e-19 Mitochondrial transcription termination factor family protein (.1) AT4G38160 72 / 6e-14 PDE191 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) AT2G44020 65 / 3e-11 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G205000 [exp] 478 / 3e-170 AT2G36000 284 / 2e-94 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.011G081400 [exp] 175 / 3e-52 AT2G34620 392 / 5e-138 Mitochondrial transcription termination factor family protein (.1) Potri.010G167400 [exp] 147 / 1e-41 AT2G03050 303 / 3e-103 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Potri.004G150600 [exp] 128 / 2e-34 AT3G18870 311 / 1e-106 Mitochondrial transcription termination factor family protein (.1) Potri.007G001800 [exp] 99 / 1e-22 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.008G088100 [exp] 83 / 1e-19 AT2G03050 117 / 7e-34 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Potri.017G067600 [exp] 89 / 2e-19 AT4G14605 571 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.009G116200 [exp] 86 / 5e-18 AT2G21710 748 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Potri.001G361800 [exp] 85 / 5e-18 AT5G55580 584 / 0.0 Mitochondrial transcription termination factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029422 [exp] 324 / 9e-110 AT2G36000 294 / 3e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10004219 [exp] 315 / 4e-106 AT2G36000 293 / 8e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10016971 [exp] 286 / 5e-95 AT2G36000 271 / 2e-89 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10021297 [exp] 283 / 6e-94 AT2G36000 264 / 8e-87 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10032120 [exp] 150 / 2e-42 AT2G34620 300 / 2e-101 Mitochondrial transcription termination factor family protein (.1) Lus10014567 [exp] 145 / 3e-40 AT2G34620 300 / 6e-101 Mitochondrial transcription termination factor family protein (.1) Lus10030451 [exp] 127 / 1e-33 AT2G03050 283 / 3e-95 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Lus10026612 [exp] 124 / 1e-32 AT2G03050 285 / 4e-96 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Lus10026325 [exp] 124 / 2e-32 AT3G18870 278 / 3e-93 Mitochondrial transcription termination factor family protein (.1) Lus10042342 [exp] 123 / 2e-32 AT3G18870 276 / 1e-92 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [poplar] [flax] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Potri.016G072200.1 pacid=42809087 polypeptide=Potri.016G072200.1.p locus=Potri.016G072200 ID=Potri.016G072200.1.v4.1 annot-version=v4.1 ATGGAAGACACACTCCTCCATTTCCTGTCCAACATCAAACCCTCCCCACTTCCTTATCCCAAAGCCCACAGCTTCCCCTTATCCCACCATGATTATTGCC CCGCACTTTCTTGCCCAAGAACCCTCCATTTTCCCACTCTTTCCTCCAAAACGAACACCGCTTCTCTCCCTCCTAAGCCTCTCAAAACACCAGAAACCCC CTCTGTATCCTCACACCATATCCCTCCACCGCCGCAATCCCCACCCCAAGAACCACCCAATACTGAATTTCAAGAAAAAATCCTCTACCTCGATTCAATA GGCCTAGACATATTCTCCTTAATAAACCACCACCGTCCGTTCATCCTCTCGGCCTCCTTATCAAACATCAAATCCATCATTGATTTACTCACCTCCATGA ATTTCACTCCACAAGAGTTCCGCAGAATCATCTCCATGTGCCCAGAAATCCTCACCTCCACTCCTTCCACTGTCACCCCAGTCATCACCTTCCTTCTCCG TGAAGCCCGCGTCAACGGCTATGATTTGAAACATGTCATAAACCGACGGCCCAGATTACTGGTATCCAGCGTCAAATACTGCTTGCGCCCCACACTCTAT TTCCTCCAAAGCATTGGCCTTGAAGAGGTAAAAAGACACACATATTTGCTGTCTTGTAGTGTTGAAAAAAAACTCTTACCAAGAATCCAATACTTTGAAA AAATTGGGTTCTCGTATAAAGATGCTGTTTCCATGTTTAGGAGATTTCCACAACTGTTTAATTACAGTATTAAGAATAATATTGAGCCCAAGCTGAATTA TTTTGTTGTGGAAATGGGAAGGGATTTGAAGGAGTTAAAAGAATTTCCGCAGTATTTTTCATTTAGTTTAGAGAATAGAATTAAGCCTAGACATCAATGT TGTGTTGAGAAAGGTCTGTGTTTTCCTCTACATACGTTGTTAAAGACAAGCCAGGAGGAGTTTATGAGTAGAATTGATGTTTGTTGTAATTCTTCTGTTC CTTCGAGAAGTTCTCCTTTGTATTCTGTAAATTGCGACGTTGATTCTTCTACTAATACAGAATAA
AA sequence Show only first row Show all	>Potri.016G072200.1 pacid=42809087 polypeptide=Potri.016G072200.1.p locus=Potri.016G072200 ID=Potri.016G072200.1.v4.1 annot-version=v4.1 MEDTLLHFLSNIKPSPLPYPKAHSFPLSHHDYCPALSCPRTLHFPTLSSKTNTASLPPKPLKTPETPSVSSHHIPPPPQSPPQEPPNTEFQEKILYLDSI GLDIFSLINHHRPFILSASLSNIKSIIDLLTSMNFTPQEFRRIISMCPEILTSTPSTVTPVITFLLREARVNGYDLKHVINRRPRLLVSSVKYCLRPTLY FLQSIGLEEVKRHTYLLSCSVEKKLLPRIQYFEKIGFSYKDAVSMFRRFPQLFNYSIKNNIEPKLNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHQC CVEKGLCFPLHTLLKTSQEEFMSRIDVCCNSSVPSRSSPLYSVNCDVDSSTNTE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Potri.016G072200 [exp]	0	1
AT2G35490			Plastid-lipid associated prote...		Potri.001G137900 [exp]	1.00	0.9902
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Potri.002G250200 [exp]	1.41	0.9855
AT3G22690			unknown protein		Potri.013G044700 [exp]	1.73	0.9850
AT3G58830			haloacid dehalogenase (HAD) su...		Potri.002G060600 [exp]	3.46	0.9827
AT1G06190			Rho termination factor (.1.2)		Potri.002G037800 [exp]	5.19	0.9771
AT4G25270		OTP70	organelle transcript processin...		Potri.015G128800 [exp]	6.00	0.9722
AT3G20680			Domain of unknown function (DU...		Potri.011G132500 [exp]	7.48	0.9779
AT4G24770		CP31, ATRBP33, ...	ARABIDOPSIS THALIANA RNA BINDI...		Potri.015G086500 [exp]	7.74	0.9733	CTRNP.1
AT3G08740			elongation factor P (EF-P) fam...		Potri.016G136600 [exp]	8.12	0.9791
AT3G54210			Ribosomal protein L17 family p...		Potri.006G113500 [exp]	8.36	0.9798

Compare expression of checked genes

Potri.016G072200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.