Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	E2Fa2-1,E2F3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36010 453 / 5e-157 E2F_DP ATE2FA, E2F3 E2F transcription factor 3 (.1.2.3) AT5G22220 360 / 1e-120 E2F_DP ATE2FB, E2F1 E2F transcription factor 1 (.2.3) AT1G47870 243 / 3e-76 E2F_DP ATE2FC, ATE2F2, E2FC ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2) AT5G14960 70 / 6e-13 E2F_DP DEL2, E2L1, E2FD DP-E2F-like 2 (.1) AT3G48160 66 / 1e-11 E2F_DP E2FE, E2L3, DEL1 E2F-LIKE 3, DP-E2F-like 1 (.1.2) AT3G01330 62 / 2e-10 E2F_DP E2FF, E2L2, DEL3 E2F-LIKE 2, DP-E2F-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G205100 [exp] 717 / 0 AT2G36010 435 / 7e-150 E2F transcription factor 3 (.1.2.3) Potri.004G200800 [exp] 449 / 7e-156 AT5G22220 457 / 1e-158 E2F transcription factor 1 (.2.3) Potri.009G161900 [exp] 447 / 6e-155 AT5G22220 422 / 7e-145 E2F transcription factor 1 (.2.3) Potri.002G023400 [exp] 246 / 5e-77 AT1G47870 274 / 1e-88 ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2) Potri.015G070300 [exp] 67 / 8e-12 AT3G48160 383 / 9e-132 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Potri.012G075300 [exp] 65 / 3e-11 AT3G48160 355 / 2e-120 E2F-LIKE 3, DP-E2F-like 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016972 [exp] 530 / 0 AT2G36010 446 / 4e-154 E2F transcription factor 3 (.1.2.3) Lus10021298 [exp] 496 / 8e-174 AT2G36010 436 / 2e-149 E2F transcription factor 3 (.1.2.3) Lus10029421 [exp] 494 / 5e-173 AT2G36010 467 / 1e-161 E2F transcription factor 3 (.1.2.3) Lus10004217 [exp] 483 / 3e-169 AT2G36010 456 / 4e-158 E2F transcription factor 3 (.1.2.3) Lus10005209 [exp] 382 / 7e-131 AT5G22220 421 / 4e-146 E2F transcription factor 1 (.2.3) Lus10013321 [exp] 336 / 8e-112 AT5G22220 351 / 2e-117 E2F transcription factor 1 (.2.3) Lus10033151 [exp] 241 / 2e-75 AT1G47870 275 / 3e-89 ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2) Lus10032439 [exp] 62 / 3e-10 AT3G48160 366 / 1e-124 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Lus10042941 [exp] 62 / 5e-10 AT3G48160 371 / 1e-126 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Lus10039455 [exp] 55 / 7e-08 AT3G01330 299 / 2e-97 E2F-LIKE 2, DP-E2F-like protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF02319 [poplar] [flax] E2F_TDP E2F/DP family winged-helix DNA-binding domain CL0123 [poplar] [flax] PF16421 [poplar] [flax] E2F_CC-MB E2F transcription factor CC-MB domain
Representative CDS sequence Show only first row Show all	>Potri.016G072300.1 pacid=42809058 polypeptide=Potri.016G072300.1.p locus=Potri.016G072300 ID=Potri.016G072300.1.v4.1 annot-version=v4.1 ATGTCCGGCGGCGCTAAAGCCTCAACCCGACCGGCTGCGACGGCGCCGCCATCAGGATCGATCTTGCCTCCTTTAGCGCGGCACCTTGCGTTTGCTACGA TGAAGCCTCCGTTTCTTCCTCCTGATGATTATCACCGATTTTCTTCTCCGAGTACTAGTAGAGTCGCCGCAGATCGGGATGCTGAGGCTATTGTTGTGAG ATCTCCTCGATTAAAACGGAAGAGTGGATTGGCTGATAATGGAGTCAGCTCCAGCAATCATGTTAGCAGTCCTGGATGCAGTAATATATCTAATAGTCCC TTCAGGACACCTGCATCAGCAAAAGGAGGTAGGACATACAACAATTCCAAGACTTCAAAGGGCAATGGAGCTGGGCCTCAAACCCCAGTGTCAAAGGCTG ATTGCTCTTCTCCTCTTACTCCAGCTGGCAGCTGTCGTTATGATAGTTCGCTTGGTCTTTTGACAAAAAGGTTTGTTGATCTATTTAAAAATGCCGATGA TGGAATTCTTGACCTAAACATTGCAGCCGAAACCTTGGAGGTACAGAAGAGGCGGATATATGATATAACAAATGTCTTGGAAGGAATTGGTCTCATAGAA AAGACACTCAAGAATAGAATACGCTGGAAGGGCATTGATGCTTCAAGGCCAAGGCAGGTAGAAGGTGATGCAACTTTATTACAGGAAGAAATTGAAAAGC TTACTATGGAAGAGCACAAACTAGATGATCAAATAAGAGAAATGCAGGAACGATTGAGAGATATGAGTGAAGAAGAGAACAATCAGAAGTGGCTTTTTGT GACTGAAGAAGATATCAAGAGTCTGCCTTGTTTCCTGAATGAAACCCTCATAGCAATTAAAGCTCCCCATGGAACTACTCTAGAAGTCCTTGATCCTGAT GAGGCTGTTGACTGTCCACAGAGGAGATACAGGATAATCCTGAGAAGCTCTATGGGTCCTATTGATGTCTACCTTGTGAGTCAATTTGAGGAGATGAATA GTGTTGATGCGTCTGCTTTTCCTCACACTTCTAGTTCAGCATCCCATGGAAACCCAGTGACAGAGATGACCACTGGTGTAAGAACTGAGAAAAGAGCTGA TCCTCTGGCACAACAGGCTCCAACTACGTTCTCTGATCCTAATGCTACTCAGGATTTAGGGGGAATGATGAAGATCGTTCCTTCTGATATAAATAACGAT TCAGATTACTGGCTTCTTTCAGATGCAGACATAAGCATTACAGATATGTGGAAGACAGACTCAGCAAATATCGAATGGACCGACTTTGGAGTGGCCGATG TCCCAACTCCTAGGACACAAACTCTATAG
AA sequence Show only first row Show all	>Potri.016G072300.1 pacid=42809058 polypeptide=Potri.016G072300.1.p locus=Potri.016G072300 ID=Potri.016G072300.1.v4.1 annot-version=v4.1 MSGGAKASTRPAATAPPSGSILPPLARHLAFATMKPPFLPPDDYHRFSSPSTSRVAADRDAEAIVVRSPRLKRKSGLADNGVSSSNHVSSPGCSNISNSP FRTPASAKGGRTYNNSKTSKGNGAGPQTPVSKADCSSPLTPAGSCRYDSSLGLLTKRFVDLFKNADDGILDLNIAAETLEVQKRRIYDITNVLEGIGLIE KTLKNRIRWKGIDASRPRQVEGDATLLQEEIEKLTMEEHKLDDQIREMQERLRDMSEEENNQKWLFVTEEDIKSLPCFLNETLIAIKAPHGTTLEVLDPD EAVDCPQRRYRIILRSSMGPIDVYLVSQFEEMNSVDASAFPHTSSSASHGNPVTEMTTGVRTEKRADPLAQQAPTTFSDPNATQDLGGMMKIVPSDINND SDYWLLSDADISITDMWKTDSANIEWTDFGVADVPTPRTQTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Potri.016G072300 [exp]	0	1	E2Fa2-1,E2F3.2
AT4G32630			ArfGap/RecO-like zinc finger d...		Potri.018G035000 [exp]	3.16	0.7555
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Potri.002G157500 [exp]	6.16	0.7021
AT5G08580			Calcium-binding EF hand family...		Potri.007G076300 [exp]	17.49	0.7434
AT5G54430		ATPHOS32	Adenine nucleotide alpha hydro...		Potri.011G125500 [exp]	34.92	0.7428
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Potri.005G146500 [exp]	37.88	0.7255
AT5G14600			S-adenosyl-L-methionine-depend...		Potri.018G120500 [exp]	39.16	0.6742
AT3G05640			Protein phosphatase 2C family ...		Potri.010G006100 [exp]	40.39	0.7053
AT4G01270			RING/U-box superfamily protein...		Potri.014G089800 [exp]	42.73	0.6958
AT1G16520			unknown protein		Potri.007G066900 [exp]	42.98	0.6871
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Potri.014G189600 [exp]	46.28	0.7038	BRCA2.1

Compare expression of checked genes

Potri.016G072300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.