Plant FIBer expression Database

Potri.016G072700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G11620 411 / 3e-145 BAS1 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021300
[exp]
358 / 7e-124 AT3G11620 354 / 2e-122 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Lus10004214
[exp]
313 / 1e-106 AT3G11620 309 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Lus10016976
[exp]
181 / 2e-56 AT3G11620 186 / 1e-58 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Lus10016975
[exp]
91 / 9e-23 AT3G11620 79 / 2e-19 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0028 AB_hydrolase PF12695 Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence
>Potri.016G072700.4 pacid=42809846 polypeptide=Potri.016G072700.4.p locus=Potri.016G072700 ID=Potri.016G072700.4.v4.1 annot-version=v4.1
ATGAGTTGTCCGAATTTGCTGCTTTCTAATCCCAGAAAGCATGCTACTTTACGACTCTCCAAAGTTTCCGGTCACACAACTGAATTGTTAGAGATTCAAT
CTGATAAGCCCACCTTTCATGTTCTCTTTATCCCTGGAAACCCAGGTGTTGTTTCGTTTTACAAGGATTTCTTGGAATCCCTGTATGAGTTGCTTGGTGG
AAGTGCTTCTGTTACAGCTATTGGGCACATATCTCACACTGAAAAGAATTGGGAGCACGGGAAGTTGTTCTCATTACAAGATCAAATTGATCATAAGGTG
GATTTCATCAAGCAGGAACTGCAAAATAATGAACTTCCTATAGTACTGGTTGGGCACTCTATTGGTTCCTACATATCACATGAAATACTAAGGTTTCTAG
AGAAGGTTACATATTTGATAGGACTATACCCTTTTTTAATGTTGAATCCACTATCAAAGCAACAGTCTAATATCCAGAATGTCGCAGAGTCCTCCATTTT
GTCTGCTTTACTTAGTTTCAGTGTAGCATCCTTGGGATTGCTACCTCAGTGCACTTTAAGGTTTATTCTGTCTAAATCTCTTGGGAGTTCATGGTCTGAT
ACTGCTATTGATGCTGCTTGTAGTCACTTGCTGCAGTACCATACCATCCGAAACATGCTTTACATGGCATTGATGGAATTCAGAAAGCTTTCAGAAATGC
CAGATTGGGCTTTCATGAGAGAGAATCACGAGAAAATTGCTTTCTTATTTGGTGTTGATGACCACTGGGGTCCGCTGCAAATGTTTGAAGAGATTTCGAA
GCAGGTTCCTGGTATTTCTCTATCAATTGAAAGGGAAGGCCATACTCATAGTTTCTGTTGCACTGAGGCTGGCTCGGAATGGGTTGCCCACCATGTAGCG
AGCTTGATTAAGAAAAAAATATCAAGCTGA
AA sequence
>Potri.016G072700.4 pacid=42809846 polypeptide=Potri.016G072700.4.p locus=Potri.016G072700 ID=Potri.016G072700.4.v4.1 annot-version=v4.1
MSCPNLLLSNPRKHATLRLSKVSGHTTELLEIQSDKPTFHVLFIPGNPGVVSFYKDFLESLYELLGGSASVTAIGHISHTEKNWEHGKLFSLQDQIDHKV
DFIKQELQNNELPIVLVGHSIGSYISHEILRFLEKVTYLIGLYPFLMLNPLSKQQSNIQNVAESSILSALLSFSVASLGLLPQCTLRFILSKSLGSSWSD
TAIDAACSHLLQYHTIRNMLYMALMEFRKLSEMPDWAFMRENHEKIAFLFGVDDHWGPLQMFEEISKQVPGISLSIEREGHTHSFCCTEAGSEWVAHHVA
SLIKKKISS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G11620 BAS1 alpha/beta-Hydrolases superfam... Potri.016G072700
[exp]
0 1
AT5G65940 CHY1 beta-hydroxyisobutyryl-CoA hyd... Potri.014G179000
[exp]
3.74 0.7703 CHY1.1
Potri.006G177250
[exp]
8.12 0.7646
AT3G55080 SET domain-containing protein ... Potri.008G047400
[exp]
17.66 0.7311
AT4G32440 Plant Tudor-like RNA-binding p... Potri.018G030500
[exp]
20.71 0.7250
AT4G33580 ATBCA5 A. THALIANA BETA CARBONIC ANHY... Potri.017G044700
[exp]
22.22 0.6915
AT1G22940 THIE, TH-1, TH1 THIAMINEE, THIAMINE REQUIRING ... Potri.003G015700
[exp]
24.24 0.7383 Pt-TH1.1
AT5G66760 SDH1-1 succinate dehydrogenase 1-1 (.... Potri.005G123900
[exp]
24.73 0.6821
AT1G72990 BGAL17 beta-galactosidase 17 (.1.2) Potri.003G037000
[exp]
26.22 0.6765
AT3G20800 Cell differentiation, Rcd1-lik... Potri.001G359300
[exp]
30.33 0.6965
Potri.006G250550
[exp]
31.08 0.7180

Potri.016G072700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.