Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CTS2.12
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52340 250 / 5e-83 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 234 / 3e-76 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 231 / 5e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 232 / 6e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 218 / 8e-71 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 211 / 9e-68 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 202 / 3e-64 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 201 / 4e-64 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 202 / 6e-64 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 200 / 1e-63 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G073700 [exp] 469 / 2e-169 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 376 / 1e-132 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 373 / 2e-131 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 345 / 2e-120 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 330 / 1e-114 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 315 / 1e-108 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 297 / 2e-101 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 296 / 4e-101 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 295 / 1e-100 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021314 [exp] 332 / 4e-115 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021318 [exp] 332 / 5e-115 AT3G51680 238 / 9e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021312 [exp] 330 / 2e-114 AT3G51680 238 / 8e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021313 [exp] 328 / 9e-114 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 328 / 1e-113 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016995 [exp] 324 / 6e-112 AT3G51680 243 / 7e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10005262 [exp] 323 / 6e-112 AT3G51680 236 / 8e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021319 [exp] 313 / 1e-107 AT1G52340 229 / 1e-74 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014228 [exp] 297 / 1e-101 AT3G26770 227 / 3e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014227 [exp] 292 / 1e-99 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.016G073800.1 pacid=42809396 polypeptide=Potri.016G073800.1.p locus=Potri.016G073800 ID=Potri.016G073800.1.v4.1 annot-version=v4.1 ATGAATCACAGGCTGGAAGGGAAGGTGGCACTAATAACTGGTGGTGCTAGTGGCATAGGCGAGTGCAGTGCAAGGCTGTTCGTTCAACATGGTGCAAAGG TTCTGATTGCAGATATCCAAGATGACCTTGGTGAAGCACTTTGCAAGAACCTTGGTTCCCAAGAATCCATATCGTACATCCATTGCGATGTTACATGTGA TTCTGATGTCAAAAATGCTGTAGACATGGCTGTCTCCAAATATGGAAAGCTTGACATCATGTTCAACAATGCAGGGATAGTAGGAACCTGCAAGGCTCCG AGGATCTTAGCTGTAGAAATCGAAGATTTCAAGAGAGTGCTTGATGTCAATTTATTTGGTGCTTTCTTGGGGGCTAAACATGCAGCTAGGGTCATGATAC CAGCAAAGAAAGGTTGCATTCTCTTCACTGGAAGTTTGGTTACAGTATCTTGTTGTTCATCTCCACATGCTTATGCCGCATCAAAGCACGCGGTTGTCGG GCTTACCAAGAACTTGGCTGTAGAATTGGGACAGCACGGAATCAGGGTCAATTGCATATCTCTTTTTACCATTGCAACCCCAATGGTAATAGAATCTATG GGTATAGAAAAGAGGAAGTTCGAGGAGTTTCTTTCTTCATCATCAGCCATCTTGAAAGAGACACTACTGGAACCAGAAGATTTTGCAAATGCGGCAATTT ATCTGGCAAGTGATGAATCCAAGTATACAAGTGGGATTAATTTGGTGATTGATGGAGGCTACAGTTTGACAAATCCTACTCTGCCTCTAGCTTTGAGAAG CCTATTTTCTTAA
AA sequence Show only first row Show all	>Potri.016G073800.1 pacid=42809396 polypeptide=Potri.016G073800.1.p locus=Potri.016G073800 ID=Potri.016G073800.1.v4.1 annot-version=v4.1 MNHRLEGKVALITGGASGIGECSARLFVQHGAKVLIADIQDDLGEALCKNLGSQESISYIHCDVTCDSDVKNAVDMAVSKYGKLDIMFNNAGIVGTCKAP RILAVEIEDFKRVLDVNLFGAFLGAKHAARVMIPAKKGCILFTGSLVTVSCCSSPHAYAASKHAVVGLTKNLAVELGQHGIRVNCISLFTIATPMVIESM GIEKRKFEEFLSSSSAILKETLLEPEDFANAAIYLASDESKYTSGINLVIDGGYSLTNPTLPLALRSLFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.016G073800 [exp]	0	1	Pt-CTS2.12
AT4G22720			Actin-like ATPase superfamily ...		Potri.007G129400 [exp]	7.34	0.6049
AT5G27930			Protein phosphatase 2C family ...		Potri.013G012200 [exp]	21.21	0.5902
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.015G015275 [exp]	36.60	0.5907
					Potri.001G360950 [exp]	40.84	0.4668
AT3G59800			unknown protein		Potri.007G139900 [exp]	44.83	0.5784
					Potri.004G086050 [exp]	73.56	0.4561
AT4G19450			Major facilitator superfamily ...		Potri.001G128200 [exp]	85.19	0.5388
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Potri.015G015501 [exp]	105.32	0.4936
AT1G23040			hydroxyproline-rich glycoprote...		Potri.010G113300 [exp]	114.07	0.5270
AT2G26920			Ubiquitin-associated/translati...		Potri.001G225200 [exp]	225.53	0.4515

Compare expression of checked genes

Potri.016G073800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.