Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02875 508 / 1e-178 ILR1 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) AT1G51760 435 / 5e-150 JR3, IAR3 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) AT5G56660 428 / 3e-147 ILL2 IAA-leucine resistant (ILR)-like 2 (.1) AT1G51780 423 / 2e-145 ILL5 IAA-leucine resistant (ILR)-like gene 5 (.1) AT5G56650 417 / 5e-143 ILL1 IAA-leucine resistant (ILR)-like 1 (.1) AT5G54140 398 / 1e-135 ILL3 IAA-leucine-resistant (ILR1)-like 3 (.1) AT1G44350 388 / 3e-131 ILL6 IAA-leucine resistant (ILR)-like gene 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G207300 [exp] 580 / 0 AT3G02875 568 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.006G207400 [exp] 572 / 0 AT3G02875 584 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.010G035900 [exp] 456 / 6e-158 AT1G51760 482 / 1e-168 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.012G007400 [exp] 454 / 1e-157 AT5G54140 548 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.002G082400 [exp] 444 / 5e-153 AT1G44350 609 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.015G004000 [exp] 440 / 5e-152 AT5G54140 520 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.003G045200 [exp] 437 / 9e-151 AT1G51760 680 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.005G178900 [exp] 437 / 2e-150 AT1G44350 604 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022761 [exp] 611 / 0 AT3G02875 489 / 3e-172 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10021321 [exp] 545 / 0 AT3G02875 573 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10016998 [exp] 544 / 0 AT3G02875 571 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10030659 [exp] 463 / 4e-161 AT1G51760 489 / 8e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030828 [exp] 459 / 1e-159 AT1G51760 489 / 6e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10010715 [exp] 449 / 2e-155 AT1G51760 463 / 1e-161 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10029200 [exp] 442 / 9e-153 AT5G56660 469 / 8e-164 IAA-leucine resistant (ILR)-like 2 (.1) Lus10037601 [exp] 438 / 3e-151 AT1G51760 649 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10032963 [exp] 437 / 8e-151 AT5G54140 545 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Lus10025668 [exp] 421 / 4e-144 AT1G44350 585 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [poplar] [flax] Peptidase_MH PF01546 [poplar] [flax] Peptidase_M20 Peptidase family M20/M25/M40 CL0035 [poplar] [flax] PF07687 [poplar] [flax] M20_dimer Peptidase dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.016G074100.1 pacid=42809278 polypeptide=Potri.016G074100.1.p locus=Potri.016G074100 ID=Potri.016G074100.1.v4.1 annot-version=v4.1 ATGGGGGACACCATCCGTCCGTCGCCATCAAGTTCAACAACATTGCAATTGCAGACCTCCTGCCTAGTGAAGATAGAAACGAATTCGGAAACGACCGAAC AGTCTCAAGATTCACATGAATCGAAGATAGGTGTGTCTAATCTAATGGCATGGCTTTGTTTGTTTATGATACTGTCAACATGTCAGACAGCATGGGCTTT AGACACTCGTTCTGAATCGAAGCTGGGTTACCTCACTCGAGAGCTGCTTGAATCAGCAAGGGAACCAGAGTTCTTTGGGTGGTTAAAACGGATTAGAAGG AGAATCCACGAGGACCCAGAGCTGGCTTTTGAAGAATACAACACGAGTCAACTCATAAGATCGGAACTTGACTCGCTTGGGATCGAATACAAGTGGCCTT TTGCAAAGACTGGGGTGGTGGGTTCGATTGGGTCAGGGTTGCAGCCGTGGTTCGGTCTTAGAGCAGACATGGATGCCCTCCCAATTCAGGAAATGGTAGA GTGGGAGCATAAAAGCAAGAATAATGGCAAAATGCATGCATGTGGCCATGATGCTCATGTAACAATGCTACTTGGAGCTGCTAAGTTGCTTGAACGCATG AAGGATGAACTAAAGGGAACTGTTAAGCTTGTCTTCCAGCCTGGAGAAGAAAGTTATGGCGGTGCTTACCATATGCTAAAAGAAGGCGCTCTTGACAATT TTCAAGGCATTTTTGGACTGCATGTTGCACCAGAAATCCCTGTTGGCACAGTTGATTCAAGACCCGGTCCAATGCTTGCTGCTTCGGGAAGGTTTATAGC TACAATTAAAGGGAAAGGTGGACATGCTGCTCGTCCCCAGGATACAAGAGATCCCGTTGTAGCTGCTTCTTTTGCCATTCTTGCTCTGCAACAGATAGTT TCTCGAGAAACAGACCCTCTTGATGCCAGGGTGGTCTCGGTCGGTTTCGTTGAGGCTGGCCAAGCTGGGAATGTAATCCCAGAGACGGTGAGATTCGGAG GCTCAATTCGGAGCATGACTACTGAAGGTCTAGTCTCCCTTCAGCAAAGGGTTATGCAGATTGTAGAGATGCAAGCAGCTGTTCACCAGTGTACTGCTTC TTTAGATTTCATGGAAGAAAAAATGAGGCCTTACCCATCCACTGTAAATGATGAAGCCATGTACAAACATGCCAAACAAGTAGGGGAAGCTTTGCTCGGA GAATCTAACGTGCTTCTTGCCCCAATGACTATGGGAGCAGAGGATTTCAGCTTTTATTCACAGAAGATGAAAGCTGCATTTTTCTTCATTGGAACAAAGA ATGAAACAGTGAAATCAGTGAAGAGATTGCATTCCCCGTACTTTGTTATAGATGAGGAGGTCCTTTCTATTGGAGCAGCTTTCCATGCTGCAGTTGCCAT TTCTTACTTGGATGGCCATGCTATTGACACACAGTAG
AA sequence Show only first row Show all	>Potri.016G074100.1 pacid=42809278 polypeptide=Potri.016G074100.1.p locus=Potri.016G074100 ID=Potri.016G074100.1.v4.1 annot-version=v4.1 MGDTIRPSPSSSTTLQLQTSCLVKIETNSETTEQSQDSHESKIGVSNLMAWLCLFMILSTCQTAWALDTRSESKLGYLTRELLESAREPEFFGWLKRIRR RIHEDPELAFEEYNTSQLIRSELDSLGIEYKWPFAKTGVVGSIGSGLQPWFGLRADMDALPIQEMVEWEHKSKNNGKMHACGHDAHVTMLLGAAKLLERM KDELKGTVKLVFQPGEESYGGAYHMLKEGALDNFQGIFGLHVAPEIPVGTVDSRPGPMLAASGRFIATIKGKGGHAARPQDTRDPVVAASFAILALQQIV SRETDPLDARVVSVGFVEAGQAGNVIPETVRFGGSIRSMTTEGLVSLQQRVMQIVEMQAAVHQCTASLDFMEEKMRPYPSTVNDEAMYKHAKQVGEALLG ESNVLLAPMTMGAEDFSFYSQKMKAAFFFIGTKNETVKSVKRLHSPYFVIDEEVLSIGAAFHAAVAISYLDGHAIDTQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Potri.016G074100 [exp]	0	1
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Potri.009G123100 [exp]	1.41	0.7893	SQS1.2
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.006G219300 [exp]	2.44	0.7843
AT5G35750		AHK2	histidine kinase 2 (.1)		Potri.014G164700 [exp]	7.48	0.7404
AT3G51990			Protein kinase superfamily pro...		Potri.001G260800 [exp]	8.00	0.6506
AT5G13500			unknown protein		Potri.001G275600 [exp]	9.59	0.6601
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.006G089301 [exp]	9.64	0.7498
AT4G39350		ATH-A, CESA2, A...	cellulose synthase A2 (.1)		Potri.002G066600 [exp]	10.19	0.6945
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037500 [exp]	12.00	0.7059
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Potri.014G002400 [exp]	13.11	0.6321
AT1G14590			Nucleotide-diphospho-sugar tra...		Potri.012G037300 [exp]	16.30	0.6952

Compare expression of checked genes

Potri.016G074100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.