Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22300 357 / 2e-121 AtNIT4, NIT4 nitrilase 4 (.1) AT3G44300 318 / 3e-106 AtNIT2, NIT2 nitrilase 2 (.1) AT3G44320 317 / 8e-106 AtNIT3, NIT3 nitrilase 3 (.1) AT3G44310 302 / 6e-100 NITI, NIT1, ATNIT1 A. THALIANA NITRILASE 1, nitrilase 1 (.1.2.3) AT2G27450 67 / 4e-12 CPA, ATNLP1, NLP1 nitrilase-like protein 1 (.1.2) AT5G12040 64 / 8e-11 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) AT5G64370 55 / 5e-08 PYD3, BETA-UP PYRIMIDINE 3, beta-ureidopropionase (.1) AT3G27010 46 / 3e-05 TCP ATTCP20, PCF1, AT-TCP20 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) AT5G08330 44 / 0.0001 TCP AtTCP11, CHE, TCP21 TCP domain protein 11, TCP family transcription factor (.1) AT3G47620 44 / 0.0001 TCP AtTCP14, TCP14 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G207700 [exp] 604 / 0 AT5G22300 369 / 2e-126 nitrilase 4 (.1) Potri.004G199600 [exp] 373 / 5e-127 AT5G22300 578 / 0.0 nitrilase 4 (.1) Potri.004G201400 [exp] 69 / 9e-13 AT2G27450 548 / 0.0 nitrilase-like protein 1 (.1.2) Potri.006G222900 [exp] 66 / 1e-11 AT5G12040 479 / 5e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Potri.007G115900 [exp] 56 / 2e-08 AT5G64370 720 / 0.0 PYRIMIDINE 3, beta-ureidopropionase (.1) Potri.017G068748 [exp] 46 / 3e-05 AT3G27010 231 / 3e-74 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Potri.001G327100 [exp] 46 / 3e-05 AT3G27010 230 / 6e-74 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Potri.001G060000 [exp] 46 / 3e-05 AT3G27010 215 / 2e-68 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Potri.002G152200 [exp] 46 / 4e-05 AT2G45680 286 / 6e-95 TCP family transcription factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013313 [exp] 364 / 5e-124 AT5G22300 561 / 0.0 nitrilase 4 (.1) Lus10005201 [exp] 358 / 2e-121 AT5G22300 559 / 0.0 nitrilase 4 (.1) Lus10021322 [exp] 332 / 6e-110 AT5G22300 265 / 7e-85 nitrilase 4 (.1) Lus10018449 [exp] 323 / 9e-107 AT5G22300 281 / 6e-92 nitrilase 4 (.1) Lus10011234 [exp] 301 / 2e-98 AT5G22300 274 / 3e-89 nitrilase 4 (.1) Lus10016999 [exp] 122 / 1e-32 AT5G22300 83 / 5e-19 nitrilase 4 (.1) Lus10026464 [exp] 68 / 4e-12 AT5G12040 526 / 0.0 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Lus10020627 [exp] 66 / 8e-12 AT2G27450 556 / 0.0 nitrilase-like protein 1 (.1.2) Lus10004862 [exp] 63 / 2e-10 AT2G27450 531 / 0.0 nitrilase-like protein 1 (.1.2) Lus10011198 [exp] 54 / 6e-09 AT5G22300 62 / 3e-12 nitrilase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00795 [poplar] [flax] CN_hydrolase Carbon-nitrogen hydrolase PF03634 [poplar] [flax] TCP TCP family transcription factor
Representative CDS sequence Show only first row Show all	>Potri.016G074200.1 pacid=42810382 polypeptide=Potri.016G074200.1.p locus=Potri.016G074200 ID=Potri.016G074200.1.v4.1 annot-version=v4.1 ATGGAGGAAGAATTCGCAAAAAATGCAGAGGCTAAGCAAGTAAAGAAGCGAGGACCCCGTCCTCTCATCGTAGCACAGTCACAGGCTAAAAAGGTTCGTA TCCGTATGCCCGCCATCTGTAGCCCTGCCATTTACCGCATCAAAGATGAACTAGGTCTCGGCTCCTGCGATGAAGCCATTCATTGGCTCGTCCGCCATGT CCGACCCGATCTTATTCCCGCCCCCGAGACACCCACTAAAACTAAATCGTCCAAGACTGGCCCGATTCCCAAAACGGGCTCCGTTGATCATGACTCGGTT CCAAAACCCGCTTGCATGGCGAGCCCAGATGGTGATATGCCTGCTTATGATTTTCTCCCAACCGCAGGTGGTGTTCCGGCAGCGAGGTCTCCGGTGAAGG CAACGGTGGTTCAGGCATCGACAGTGTTTTTTGACACTCCGGCAACATTGGAAAAAGCAGAAAGATTGATTGCTGGTGCGGCTTCATATGGGTCACAATT ACTTGTGTTTCCAGAGGCATTTGTAGGTGGTTATCCTACGTGTGTGAAGCTTGATGCTACAAATTCACCTGAAACAGATGGTGATTTGCAGAAGTACTAT GCCTCAGCTATTGATGTGCCTGGTCCTGAAGTTGACAGACTTGCAAAATTTGCTGGTAAATATAAAGTCCACTTAGTAATGGGAGTGGTGGAGAGAGCTG GATGTTATCTCTATAGTACAATGCTGTTCTTTGATTCCCTGGGAAAGTGTCTTGGACAGCACCGCAAGCTAATACAAACGGCATCAGAAAGTGCACTGTG GCGTTCTGGAGAGAAATCCACACTGCCAACATATGAGACCTCAATTGGAAAAATTGGTGGCCTCATCTGTTGGGACAATAGATTACCACTTCTGAGAACA GAGTTGTATGATAAAGGTGTGGAAATATATTGTGCACCTACAGCTGATGCAGGAGAAATATGGAGAGCATCAATGACCCACATTGCCCTAGAAGGTAGTT GCTTTGTTCTTTCTGCAAATCAATTTTGTAGGAGGAGAGATTATCCTTTGCCACCTGGGAATATAAATGGTGATGCATCCTTAGATGACATCACATGCGC TGGAGGTAGTGTTATCATTTCACCATCAGGGACCATCCTGGCTGGTCCTGATTACCAAGGAGAATGCCTTATCTCAGCTGATCTAGACCTTGGACATATC ATTCTAGCAAAGACACAATATGGCGGAATTGAGAGTGGTGTCGATAAGAACCATGTCAGTGTGGCTGCAAACGGATCAGAACCCAGTTTGTTTGCAGCAG AAATGACAACTAAAGCTCTTGAAGAGCTTTCAGGGTGA
AA sequence Show only first row Show all	>Potri.016G074200.1 pacid=42810382 polypeptide=Potri.016G074200.1.p locus=Potri.016G074200 ID=Potri.016G074200.1.v4.1 annot-version=v4.1 MEEEFAKNAEAKQVKKRGPRPLIVAQSQAKKVRIRMPAICSPAIYRIKDELGLGSCDEAIHWLVRHVRPDLIPAPETPTKTKSSKTGPIPKTGSVDHDSV PKPACMASPDGDMPAYDFLPTAGGVPAARSPVKATVVQASTVFFDTPATLEKAERLIAGAASYGSQLLVFPEAFVGGYPTCVKLDATNSPETDGDLQKYY ASAIDVPGPEVDRLAKFAGKYKVHLVMGVVERAGCYLYSTMLFFDSLGKCLGQHRKLIQTASESALWRSGEKSTLPTYETSIGKIGGLICWDNRLPLLRT ELYDKGVEIYCAPTADAGEIWRASMTHIALEGSCFVLSANQFCRRRDYPLPPGNINGDASLDDITCAGGSVIISPSGTILAGPDYQGECLISADLDLGHI ILAKTQYGGIESGVDKNHVSVAANGSEPSLFAAEMTTKALEELSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Potri.016G074200 [exp]	0	1
AT3G11590			unknown protein		Potri.016G074300 [exp]	7.21	0.8853
AT4G02550			unknown protein		Potri.007G059900 [exp]	8.48	0.8593
AT3G62270			HCO3- transporter family (.1)		Potri.008G100300 [exp]	8.94	0.8380
AT5G60710			Zinc finger (C3HC4-type RING f...		Potri.016G001300 [exp]	14.14	0.8626
AT3G48210			unknown protein		Potri.012G088000 [exp]	17.20	0.8226
AT2G32950		FUS1, EMB168, D...	FUSCA 1, EMBRYO DEFECTIVE 168,...		Potri.011G021700 [exp]	17.29	0.8354
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.015G130701 [exp]	17.54	0.8571
AT4G14010		RALFL32	ralf-like 32 (.1)		Potri.017G059900 [exp]	19.62	0.8152
					Potri.013G064900 [exp]	21.74	0.8517
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Potri.008G140500 [exp]	24.28	0.8134

Compare expression of checked genes

Potri.016G074200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.