Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11570 507 / 1e-179 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT5G06230 485 / 7e-172 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT5G19160 345 / 2e-115 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G06080 341 / 7e-114 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G20590 306 / 8e-100 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT3G62390 297 / 1e-96 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT3G12060 286 / 2e-91 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT5G06700 283 / 1e-89 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT1G48880 278 / 1e-89 TBL7 TRICHOME BIREFRINGENCE-LIKE 7 (.1) AT1G60790 278 / 3e-88 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G208251 [exp] 451 / 1e-158 AT3G11570 280 / 1e-91 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.008G203900 [exp] 348 / 1e-116 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Potri.002G054400 [exp] 343 / 1e-114 AT3G06080 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.002G195800 [exp] 312 / 3e-101 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.006G071500 [exp] 301 / 6e-98 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.016G059300 [exp] 305 / 9e-98 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.002G071900 [exp] 297 / 2e-97 AT1G48880 478 / 1e-167 TRICHOME BIREFRINGENCE-LIKE 7 (.1) Potri.018G133000 [exp] 300 / 3e-97 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.008G108500 [exp] 295 / 8e-96 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004225 [exp] 543 / 0 AT3G11570 518 / 0.0 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10021328 [exp] 530 / 0 AT3G11570 504 / 1e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10017004 [exp] 525 / 0 AT3G11570 503 / 4e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10029430 [exp] 440 / 5e-154 AT3G11570 443 / 2e-155 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10000250 [exp] 429 / 3e-150 AT3G11570 428 / 7e-150 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10034041 [exp] 341 / 1e-113 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10003734 [exp] 332 / 1e-110 AT3G06080 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10034039 [exp] 330 / 1e-109 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10028025 [exp] 328 / 3e-108 AT3G06080 520 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10041219 [exp] 323 / 4e-107 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.016G074800.1 pacid=42810297 polypeptide=Potri.016G074800.1.p locus=Potri.016G074800 ID=Potri.016G074800.1.v4.1 annot-version=v4.1 ATGGATCATCATCACCAGCCCACAAACCAAAAACACCACCTTCTTTATTTTCCCCTCGTAATCAAGAGAGAACTTGTCTATGCAATCTCTTTTCTCATTG TCGTGGCGTCTTCATTCTTCGTCTTTGATCTTCTTGGCTCTTTCGATCCGCGATCTGTCTTTCGTTTTAGTTTCATAAAGAACGATAAAGACTCGTCACA CTCAGCCTGTGATTATTCTCGTGGAAGATGGGTTCGGGATGAAAGTTACAAGAATCTATCTTACACTGAGAACTGCCCCTTTCTTGATCCAGGCTTTCGG TGCGTTCTAAACGGAAGAAAAGACGTAGACTATCGGAATTGGCGATGGCAGCCAGAAGGGTGTGATTTGCCAAGATTTAATGCAAGTGAAATCCTAAACA GAGGCAGAAATGGAAGGGTTGTATTTGCTGGGGACTCTGTTGGCAGAAACCAGTGGGAGTCTTTCCTGTGCATGCTTGCTCAAGGGGTTTCCAACAAGTC TTCAATATATGAAGAGAACGGGAACCCAATAACTAAACACAAAGGATTTCTCTCCATGCGCTTCAGCGAATACAATCTCACCGTTGAATACTATAGGGCA CCTTTTCTGGTATTCATCGGCCGCCCACCTCGGAATTCACCGGCTGGCATCAAAATGACGATTAAGGTCGACCAGCTGCACTGGTTTTCCAGGAACTGGG AAGGGGCTGACGTTCTGATGTTCAACACAGGGCATTGGTGGAATGAAGATAAAACCGTCAAGATGGGTAACTACTTTGAGGACGGAGGTAAGGTTAACAT GTCGTTGAATGTGATGGAAGCATTTCAAAAATCTCTCCAGACATGGAAGTCATGGGGTGAAAATTTAAGCCCTGAAGGGACACGTGTTTTCTTTCGTGGC TACTCCCCAGTACATTACAGGAATGCTACGTGGGATGAGGGGGGCCGATGTGATGTTGATATACAACCAGAGGCAAACTACATAATGCTGGAACCTGAGC CAGTGTATAACCAAATAATTTCTACTGTAATCAAAGAGATGGATTATGGAGACAGGAAGGTTCGGTTCTTAAACATTACGCATCTGTCACAGTTCAGGTA CGACGGTCACCCTTCTCGTCATCGAGAGCCCGGCACTCCGGTTGATGCTCCGCAGGACTGCAGTCATTGGTGCTTACCTGGAATACCAGATACATGGAAT GAAATCCTATATGCTAATTTATTGTCAATGGGATTCAGAAACAGGTGA
AA sequence Show only first row Show all	>Potri.016G074800.1 pacid=42810297 polypeptide=Potri.016G074800.1.p locus=Potri.016G074800 ID=Potri.016G074800.1.v4.1 annot-version=v4.1 MDHHHQPTNQKHHLLYFPLVIKRELVYAISFLIVVASSFFVFDLLGSFDPRSVFRFSFIKNDKDSSHSACDYSRGRWVRDESYKNLSYTENCPFLDPGFR CVLNGRKDVDYRNWRWQPEGCDLPRFNASEILNRGRNGRVVFAGDSVGRNQWESFLCMLAQGVSNKSSIYEENGNPITKHKGFLSMRFSEYNLTVEYYRA PFLVFIGRPPRNSPAGIKMTIKVDQLHWFSRNWEGADVLMFNTGHWWNEDKTVKMGNYFEDGGKVNMSLNVMEAFQKSLQTWKSWGENLSPEGTRVFFRG YSPVHYRNATWDEGGRCDVDIQPEANYIMLEPEPVYNQIISTVIKEMDYGDRKVRFLNITHLSQFRYDGHPSRHREPGTPVDAPQDCSHWCLPGIPDTWN EILYANLLSMGFRNR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Potri.016G074800 [exp]	0	1
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.004G237000 [exp]	3.31	0.9598
AT5G63100			S-adenosyl-L-methionine-depend...		Potri.015G082432 [exp]	4.24	0.9575
AT5G39980			Tetratricopeptide repeat (TPR)...		Potri.017G075700 [exp]	5.47	0.9592
AT4G01650			Polyketide cyclase / dehydrase...		Potri.014G110600 [exp]	6.70	0.9546
AT4G24175			unknown protein		Potri.005G240800 [exp]	7.34	0.9522
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Potri.013G067900 [exp]	9.16	0.9343
AT3G22150			Tetratricopeptide repeat (TPR)...		Potri.006G007800 [exp]	9.89	0.9501
AT3G03630		CS26	cysteine synthase 26 (.1)		Potri.019G045800 [exp]	10.00	0.9551
AT5G07900			Mitochondrial transcription te...		Potri.004G013000 [exp]	10.58	0.9192
AT2G44920			Tetratricopeptide repeat (TPR)...		Potri.008G058800 [exp]	11.00	0.9411

Compare expression of checked genes

Potri.016G074800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.