Plant FIBer expression Database

Potri.016G074900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G11560 1033 / 0 LETM1-like protein (.1.2.3.4)
AT5G06220 986 / 0 LETM1-like protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G208300
[exp]
1541 / 0 AT3G11560 1056 / 0.0 LETM1-like protein (.1.2.3.4)
Potri.001G187100
[exp]
177 / 4e-46 AT5G06220 145 / 1e-35 LETM1-like protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017005
[exp]
1142 / 0 AT3G11560 975 / 0.0 LETM1-like protein (.1.2.3.4)
Lus10021329
[exp]
1134 / 0 AT3G11560 976 / 0.0 LETM1-like protein (.1.2.3.4)
Lus10038268
[exp]
171 / 4e-44 AT3G11560 147 / 4e-37 LETM1-like protein (.1.2.3.4)
Lus10025835
[exp]
167 / 2e-42 AT1G52155 353 / 2e-114 unknown protein
Lus10029426
[exp]
125 / 1e-29 AT5G27720 190 / 2e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07766 LETM1 LETM1-like protein
Representative CDS sequence
>Potri.016G074900.10 pacid=42809932 polypeptide=Potri.016G074900.10.p locus=Potri.016G074900 ID=Potri.016G074900.10.v4.1 annot-version=v4.1
ATGGAAGTTAAATTGCAGCATCATAGCTTCTTAAATTCAAGCTCTTCAAATCCATGGCTTCCACAAAATTCTATTGTTCCCAGTATCTCCTGCAAAAGAG
TAGCTCATTTGGATTATCTACTGATCAATTGGGGTAACTCAAGGAAAAGATGCCTTGTGAAGCTTGCATTGCGAGGGAATGGTAACCAGAGTCTTAATTA
CCAATTGGTTCGATATAAGAAATTTAATCTGGCATATCGTAAGACAAGAAGGATGGGCCACCTTTTTCCCCTATCATCTGCTGATGATGGTGTAACTGTC
AATGGTACTCCTTCTGCTAGTACCAGTAGTGACGTGGAGGAAATGAGACTTAAACTCAATCAGTCACTACAAGGTGATGATTCAAGTGATAAACTTGTTC
AATCTTTACATGATGCAGCAAGGGTTTTTGAGGTGGCAATTAAAGAACAGGGTTTGCTATCGAAGTTTTCCTGGCTTTCAATGGCCTGGCTTGGTGTAGA
TAGGAATGCATGGCTGAAAACGCTGTGCTATCAGGCTTCTGTTTATTCCTTACTACAAGCAGCACATGAGATTTCTTCCCAAGGTGATGGTAAAGACAGA
GATGTGAATATTTTTGTTCAAAGGAGTTTTTTACAGCAATCTGCTCCCCTAGAGAGCTTGATCAGGGATAAACTATCTACTAAACAACCTGAAGCTTATG
AATGGTTTTGGTCTAAGCAAGTTCCGATGGTGGTGGCATCTTTTCTTAATTATCTTGAAGAGGACCCACGCTTTACTTCTGCCACTGCTGTGTTTGGCAA
AGGCTTGTCCTCGATTTCAGGCAATGGAAGTGATATTTCACTTCTTTTACTGGCACTGACATGTAATGCTGCAATCACAAAACTTGGCACCACAAAAGTT
TCTTGCCCACAATTCTTCTCCGTGATCTCAGATATAACTGGTAGATTGATGGACATGCTGGTTGATTTTATTCCTGTACGCCAAGCTTATCATTCTATAA
AGCATATTGGTCTACGCAGAGAATTTCTTTTCCATTTTGGGCCTCGATTTGCGGCATGCCGAGTAAAAAATGATCGTGGATCAGAAGAGGTGATTTTCTG
GGTTAATCTTGTACAGAAACAGCTCCAACAAGCTATAGATAGGGAGAAAATATGGTCAAGACTAACTACTTCAGAAAGTATTGAGGTTTTGGAGAAGGAT
TTGGCTATATTTGGATTCTTTATTGCCTTAGGAAGAAGTACACGATCCTTTTTATCAGACCATGGATTTGATGTTCTAGATGATCCTATTGAAGGCTTCA
TAGGGTACCTTATTGGGGGAAGTGTTTTGTACTATCCTCAGCTTTCATCAATAAGCTCCTATCAGTTGTATGTAGAGGTAGTTTGTGAGGAGCTGGATTG
GCTTCCTTTTTATCCAGGCAACGTTGGCACCACAAAACTGTCTCTTGGACACAAAAATAAACAAAAGGGTCCTCCAAATGCTGAAGCTATCCCTCAAGTA
TTAGATGTCTGCTCTCACTGGATGCAGAGCTTTATTAAATACAGTAAATGGCTACAGAATCCATCCAATGTTAAGGCAGCAAGGTTTCTTTCCAGGGGGC
ACGCCAAATTAATGGAGTGCAGAGAAGAACTAGGAATGTCTTGGAAAATGACAGAAAGCAATATCAATTATTCTGTTGAGATAACAAGACCTGAAATTAA
TTTGATGACTTATAAAGAGACAGATTCATTCAACAAGGCATTGGAGAGTGTTGAAGGAGCTCTTGTGAGACTTGAAAAACTACATCAGGAGCTGCCTGCA
TCAAGCTCTAATTCTGGGAAAGAGCATATAAAGGCTGCGTGTTCTGATCTTGAGAAAATAAGGAAACTGAAGAAAGAGGCTGAATTTCTGGAGGCATCTT
TCAGAACAAAAGCAGCTTCGCTTCAGCAGGGAGAAGATGAAAGTAGTCTACAATCTTGTATTAGTGAGCAGCAACAATACTTGAAAGGGAACGGGAGGAA
GAATGCTGATGTAAGGCTCGATAGAAGTAAAAGTAAATTTCAAGGACTGTGGAACTTCCTTGTGTACTCTCCAACCAAGAAGCCTGGATCTGATGTGGCA
GTTGTTGATGCATCTGGAGATGCAGATATTGGGCAAACTACTACAAGTATGGGTATTGGAGAGTTGGAGTCAAATGAAATTCGTCGCTTTGAACTTCTAA
GGAATGAACTGATGGAACTTGAAAAACGGGTTCAAAAAAGTACTGATCAATATGAAAATGAAGAGGATATCAAGGTTACAGATGATGGTGCTAATTACCA
TGATGAGGCTGCAAGCTCTCAATTAATCCAGGTTCCAAGGAATGAAAATATCATCGAAAAATCAATTGTTAAGCTAAAGAAAACAAGCACGGATGTGTTG
CAAGGAACTCAGCTTCTAGCTATTGATGTTGCTGCTTCAATGGGGTTGCTTAAAAGGCTCTTGATTGGAGATGAGTTAACAGAGAAAGAAAGAAAAACTC
TCCGGAGAACTATGATGGACTTGGCATCAGTGATACCTATTGGTGTTCTTATGCTTCTTCCTGTTACTGCTGTGGGGCATGCAGCAATGTTGGCTGCTAT
CCAGAGATATGTGCCAGCTTTGATACCATCCACATATGGACCAGAAAGGTTGGATCTCTTGAGGCAACTTGAGAAAGTGAAGGAAATGGAAACGAGTGAA
CTGGATACCAAAGAAAATGGAGAGGTACTATCCTGA
AA sequence
>Potri.016G074900.10 pacid=42809932 polypeptide=Potri.016G074900.10.p locus=Potri.016G074900 ID=Potri.016G074900.10.v4.1 annot-version=v4.1
MEVKLQHHSFLNSSSSNPWLPQNSIVPSISCKRVAHLDYLLINWGNSRKRCLVKLALRGNGNQSLNYQLVRYKKFNLAYRKTRRMGHLFPLSSADDGVTV
NGTPSASTSSDVEEMRLKLNQSLQGDDSSDKLVQSLHDAARVFEVAIKEQGLLSKFSWLSMAWLGVDRNAWLKTLCYQASVYSLLQAAHEISSQGDGKDR
DVNIFVQRSFLQQSAPLESLIRDKLSTKQPEAYEWFWSKQVPMVVASFLNYLEEDPRFTSATAVFGKGLSSISGNGSDISLLLLALTCNAAITKLGTTKV
SCPQFFSVISDITGRLMDMLVDFIPVRQAYHSIKHIGLRREFLFHFGPRFAACRVKNDRGSEEVIFWVNLVQKQLQQAIDREKIWSRLTTSESIEVLEKD
LAIFGFFIALGRSTRSFLSDHGFDVLDDPIEGFIGYLIGGSVLYYPQLSSISSYQLYVEVVCEELDWLPFYPGNVGTTKLSLGHKNKQKGPPNAEAIPQV
LDVCSHWMQSFIKYSKWLQNPSNVKAARFLSRGHAKLMECREELGMSWKMTESNINYSVEITRPEINLMTYKETDSFNKALESVEGALVRLEKLHQELPA
SSSNSGKEHIKAACSDLEKIRKLKKEAEFLEASFRTKAASLQQGEDESSLQSCISEQQQYLKGNGRKNADVRLDRSKSKFQGLWNFLVYSPTKKPGSDVA
VVDASGDADIGQTTTSMGIGELESNEIRRFELLRNELMELEKRVQKSTDQYENEEDIKVTDDGANYHDEAASSQLIQVPRNENIIEKSIVKLKKTSTDVL
QGTQLLAIDVAASMGLLKRLLIGDELTEKERKTLRRTMMDLASVIPIGVLMLLPVTAVGHAAMLAAIQRYVPALIPSTYGPERLDLLRQLEKVKEMETSE
LDTKENGEVLS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G11560 LETM1-like protein (.1.2.3.4) Potri.016G074900
[exp]
0 1
AT3G63520 ATNCED1, ATCCD1... carotenoid cleavage dioxygenas... Potri.001G265400
[exp]
4.69 0.8870
AT5G64940 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-R... Potri.007G082500
[exp]
4.79 0.9237
AT3G17650 YSL5, PDE321 pigment defective 321, YELLOW ... Potri.017G150301
[exp]
6.70 0.9007
AT2G43945 unknown protein Potri.013G084300
[exp]
9.00 0.9168
AT2G03390 uvrB/uvrC motif-containing pro... Potri.010G161600
[exp]
10.77 0.9234
AT3G11560 LETM1-like protein (.1.2.3.4) Potri.006G208300
[exp]
11.48 0.9029
AT1G70100 unknown protein Potri.010G038100
[exp]
13.74 0.8696
AT3G21580 ABCI12 ATP-binding cassette I12, coba... Potri.008G199900
[exp]
16.97 0.8887
AT5G62790 PDE129, DXR PIGMENT-DEFECTIVE EMBRYO 129, ... Potri.012G080900
[exp]
27.11 0.8989 DXR.1
AT5G53580 AtPLR1 pyridoxal reductase 1, NAD(P)-... Potri.015G006900
[exp]
27.16 0.8991

Potri.016G074900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.