Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41080 755 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 486 / 1e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 486 / 2e-162 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G68930 464 / 1e-154 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 461 / 1e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 466 / 2e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20230 456 / 2e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 456 / 3e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G04780 449 / 5e-150 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G24000 448 / 2e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G136200 [exp] 518 / 2e-175 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.017G091600 [exp] 490 / 3e-165 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 479 / 2e-159 AT3G22690 582 / 0.0 unknown protein Potri.007G085500 [exp] 478 / 2e-159 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.018G040100 [exp] 472 / 1e-157 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G208000 [exp] 469 / 2e-157 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 469 / 3e-155 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 468 / 4e-155 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G077700 [exp] 459 / 2e-154 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022629 [exp] 897 / 0 AT2G41080 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003324 [exp] 760 / 0 AT2G41080 597 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003325 [exp] 649 / 0 AT2G41080 570 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030908 [exp] 522 / 6e-171 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 513 / 3e-167 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10016425 [exp] 487 / 8e-163 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10018978 [exp] 480 / 6e-157 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038741 [exp] 468 / 1e-156 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001617 [exp] 464 / 6e-156 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039117 [exp] 462 / 1e-154 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.016G075000.1 pacid=42809554 polypeptide=Potri.016G075000.1.p locus=Potri.016G075000 ID=Potri.016G075000.1.v4.1 annot-version=v4.1 ATGGCTATAGCTGTTAGAAGAATTGGAGGAGAAAAAAGTTGGTTTTGTCACCTCCACCGTTTTTTCTCTACAAGCACAGAGAACGCTGCCTCATCTATTT CTGATATTGAAGGAGAGTTCAAAAGCCTTTGCTCTGCAGGACGCATAAAAGAAGCCTTTAAGACATACAATGCAGAAATATGGACGGACCAACATCTATT CTCTTATCTCATCCAATCTTTCATACCCCAAAAGTCCCTCTTGATAGCAAAACAGCTCCATTCTTTAGCTATCACTTCTGGGTATTACTTCAAAGACAAG TTTGTGAGAAATCACCTACTGAACATGTACTTCAAAATGGGAGAAATACAAGAAGCTATAGCATTCTTTAATGCAATGCCAATGAGAAACATCATGTCTC ATAACATTTTGATAAATGGTCATGTGCAACATGGTGATTTGGACAGTGCGATTAAGGTGTTTGATGAAATGCTTGAAAGAAACGTTGCTACGTGGAATGC AATGGTTTCTGGGTTGATTCAGTTTGAATTTAACGAAAATGGGTTGTTTCTGTTTAGAGAAATGCATGAGTTGGGGTTTTTGCCTGACGAGTTCACTTTA GGTAGTGTACTTAGAGGTTGTGCAGGTTTGAGAGCTTCATATGCAGGAAAGCAGGTTCATGCTTATGTGTTGAAATATGGGTATGAATTCAATTTGGTTG TTGGGAGTTCTTTGGCTCATATGTATATGAAAAGCGGTAGCTTGGGAGAAGGAGAGAAAGTTATCAAAGCTATGCGGATACGCAATGTGGTTGCTTGGAA TACACTTATAGCAGGTAATGCTCAAAATGGGCACTTTGAGGGAGTTTTGGATTTGTATAATATGATGAAAATGTCTGGCCTCAGGCCAGATAAGATTACG TTGGTGAGTGTAATTAGTTCTAGTGCTGAACTGGCAACTCTTTTTCAGGGTCAGCAGATTCATGCTGAAGCGATCAAAGCTGGAGCTAATTCTGCTGTTG CAGTGCTTAGTTCATTGATCAGTATGTATTCAAAGTGTGGGTGTTTGGAAGATTCAATGAAAGCTTTGTTGGACTGTGAACATCCGGATTCTGTTTTGTG GAGCTCGATGATTGCTGCTTATGGATTTCATGGGCGAGGAGAGGAAGCTGTTCATTTATTTGAGCAGATGGAGCAAGAGGGTGTGGGGGGAAATGATGTT ACTTTCTTAAGCTTGCTTTATGCTTGTAGTCATAACGGATTGAAGGAAAAAGGGATGGGATTTTTCAAGTTGATGGTAGAGAAATATGGATTGAAGCCTA GACTGGAACATTACACTTGTGTGGTTGATCTACTTGGTAGGTCGGGATGTTTGGATGAAGCAGAGGCCATGATAAGATCAATGCCTCTTGAAGCAGATGT TGTGATTTGGAAAACTTTGTTATCTGCGTGTAGAATCCACAGAAATGCAGACATGGCAACAAGGACTGCTGAAGAAATTCTTAGGCTTAATCCTCAGGAT TCAGCAACTTATGTCCTCCTGTCAAACATTCATGCTTCTGCTAAGAGGTGGAAGGATGTCTCCAAAGTAAGGACAACAATGAGAGATAGGAACGTTAAGA AGGAACCAGGAGTAAGCTGGTTGGAAGTAAAGAATCGGGTTTTCCAGTTCTCTATGGGTGACAAATCTCACCCAATGTCAGAGGAGATTGATTTATATTT GAAAGAACTAATGGAGGAGATGAAGTTGCGGGGTTATGTGCCAGATACTGCCACTGTTTTTCATGATACGGACAGTGAAGAGAAAGAAAATAGCTTGGTC AACCACAGTGAGAAGTTGGCTATTGCTTTCGGTCTAATGAACATTCCACCTGGTTCGCCAATAAGAGTAATGAAGAACTTGCGTATCTGCAGTGACTGCC ATGTTGCCATCAAGCTCATATCCGACATCAATAACAGAGAAATTATTGTTAGAGATACTAGCAGATTTCACCATTTCAAACATGGGAAATGTTCTTGTGG GGATTACTGGTAA
AA sequence Show only first row Show all	>Potri.016G075000.1 pacid=42809554 polypeptide=Potri.016G075000.1.p locus=Potri.016G075000 ID=Potri.016G075000.1.v4.1 annot-version=v4.1 MAIAVRRIGGEKSWFCHLHRFFSTSTENAASSISDIEGEFKSLCSAGRIKEAFKTYNAEIWTDQHLFSYLIQSFIPQKSLLIAKQLHSLAITSGYYFKDK FVRNHLLNMYFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGFLPDEFTL GSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKIT LVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGVGGNDV TFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEILRLNPQD SATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQFSMGDKSHPMSEEIDLYLKELMEEMKLRGYVPDTATVFHDTDSEEKENSLV NHSEKLAIAFGLMNIPPGSPIRVMKNLRICSDCHVAIKLISDINNREIIVRDTSRFHHFKHGKCSCGDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41080			Tetratricopeptide repeat (TPR)...		Potri.016G075000 [exp]	0	1
AT5G35930			AMP-dependent synthetase and l...		Potri.019G043800 [exp]	1.00	0.8717
AT2G01730		ATCPSF73-II, ED...	embryo sac development arrest ...		Potri.010G106200 [exp]	1.41	0.8482	ATCPSF73.1
AT3G13226			regulatory protein RecX family...		Potri.001G467400 [exp]	5.65	0.8013
AT3G16610			pentatricopeptide (PPR) repeat...		Potri.003G006800 [exp]	8.94	0.8232
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Potri.006G119600 [exp]	10.48	0.8178
AT4G31810			ATP-dependent caseinolytic (Cl...		Potri.006G264200 [exp]	12.96	0.7921
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Potri.001G003900 [exp]	19.05	0.7922
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Potri.005G129800 [exp]	20.19	0.8067
AT5G36930			Disease resistance protein (TI...		Potri.006G269900 [exp]	21.16	0.7590
AT3G49600		SUP32, ATUBP26,...	ubiquitin-specific protease 26...		Potri.005G179500 [exp]	23.02	0.7456	UBP26.2

Compare expression of checked genes

Potri.016G075000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.