Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08370 295 / 1e-97 DCP1, ATDCP1 decapping 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G208600 [exp] 488 / 1e-173 AT1G08370 335 / 1e-113 decapping 1 (.1) Potri.009G160200 [exp] 329 / 4e-111 AT1G08370 377 / 7e-130 decapping 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017007 [exp] 375 / 2e-129 AT1G08370 351 / 8e-120 decapping 1 (.1) Lus10034186 [exp] 327 / 4e-110 AT1G08370 380 / 2e-131 decapping 1 (.1) Lus10043399 [exp] 310 / 1e-103 AT1G08370 375 / 2e-129 decapping 1 (.1) Lus10021331 [exp] 310 / 1e-102 AT1G08370 305 / 1e-100 decapping 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF06058 [poplar] [flax] DCP1 Dcp1-like decapping family
Representative CDS sequence Show only first row Show all	>Potri.016G075200.2 pacid=42810076 polypeptide=Potri.016G075200.2.p locus=Potri.016G075200 ID=Potri.016G075200.2.v4.1 annot-version=v4.1 ATGTCACAGACAGGGAAATTGATGCCACATCTGGATCAGCAGAGCACCAAGATGCTCAATCTCACTGTGCTCCAGCGAATGGATACTTTCATCGAAGAGA TTCTAATCACAGCAGCGCATGTCACTTTCTACGCTTTCAATATCGAAACCAATCAGTGGAGCCGCAAGGATGTTGAAGGATCTCTCTTTGTAGTCAAGAG GAATACTCAACCGCGGTTTCAGTTTATTGTAATGAACCGGCGAAACACAGAAAATTTGGTGGAGAATTTGTTAGGGGATTTCGAGTATGAAGTTCAAGCA CCTTATTTGTTGTATCGGAATGCATCTCAAGAAGTTAATGGTATTTGGTTTTACAATCCTCGAGAATGTGAGGATGTTGCCAACCTCTTTACTAGGATAC TTAATGCTTACTCTAAGGTTCCTGCAAAGCCAAAAGTAGCTTCAGGCAAAAGTGAATTTGAGGATCTTGAAGCAGTCACAAATATGTCAGTGTTTGAAGG TCCCTTGGAACCTTCATCGACTGCCTCTGCTGCCAATGATAGTTCTGAAGATTCTTCATTTGAGAACTTTTTTAGTACTGCCATGAATATTGGAAGTACT GCTTCTACTGTAACAAATTCAAGACAGCAATATCAGCCTTCTCCCACCATTCTGTTATCCTCCCATACACCTAATGTGGTTATGCCTTCTGCACCAGTTC CACAAATACCATCTCTTCCTCTTTCATCTTTAACCACCTCAAAAAGCATCCATGGCCCTCCCGATCCAATCAGCAGTGGCAGTCATGTCGCTAATCTTGT GAAGCCCTCGTCATTTTTCGCGCCCCCTTCTTCCTCATCTGCATTGATGGCGCCCCCTCTCTCCTCGCCACTGCCTAGTGCTCCTTCACTTCAACCTCCC CTAAATCTGCAACGACCATATGGCACCCCAATGCTTCAACCCTTCCCACCTCCTGCACCACCACCATCTCTTACTCCTAGCTCTACTACTACTCCACCTC TTATTGGCAGAGACGAAGTCCGTGATGCACTTCTAATGCTTGCTCAGGATGATAAATTCATCGACATGTTCCATCAAGCACTGCTGAAGGTGCACCACCA TCCATGA
AA sequence Show only first row Show all	>Potri.016G075200.2 pacid=42810076 polypeptide=Potri.016G075200.2.p locus=Potri.016G075200 ID=Potri.016G075200.2.v4.1 annot-version=v4.1 MSQTGKLMPHLDQQSTKMLNLTVLQRMDTFIEEILITAAHVTFYAFNIETNQWSRKDVEGSLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEVQA PYLLYRNASQEVNGIWFYNPRECEDVANLFTRILNAYSKVPAKPKVASGKSEFEDLEAVTNMSVFEGPLEPSSTASAANDSSEDSSFENFFSTAMNIGST ASTVTNSRQQYQPSPTILLSSHTPNVVMPSAPVPQIPSLPLSSLTTSKSIHGPPDPISSGSHVANLVKPSSFFAPPSSSSALMAPPLSSPLPSAPSLQPP LNLQRPYGTPMLQPFPPPAPPPSLTPSSTTTPPLIGRDEVRDALLMLAQDDKFIDMFHQALLKVHHHP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Potri.016G075200 [exp]	0	1
AT5G14540			Protein of unknown function (D...		Potri.012G083200 [exp]	9.32	0.8020
AT1G73840		ESP1	ENHANCED SILENCING PHENOTYPE 1...		Potri.012G056200 [exp]	21.90	0.7880
AT5G63610		HEN3, CDKE;1, C...	HUA ENHANCER 3, cyclin-depende...		Potri.003G142900 [exp]	25.88	0.7698	Pt-HEN3.2
AT3G55730	MYB	ATMYB109	myb domain protein 109 (.1)		Potri.008G062700 [exp]	45.34	0.7558
AT4G08320		TPR8	tetratricopeptide repeat 8, Te...		Potri.005G177400 [exp]	55.64	0.7384
AT3G30841			Cofactor-independent phosphogl...		Potri.017G109500 [exp]	67.48	0.7356
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.006G081100 [exp]	68.22	0.7304
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Potri.005G026600 [exp]	100.15	0.7290
AT5G63280	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.015G090300 [exp]	106.89	0.7286
AT1G48050		KU80, ATKU80	ARABIDOPSIS THALIANA KU80 HOMO...		Potri.014G069700 [exp]	128.98	0.6908	Pt-KU80.1

Compare expression of checked genes

Potri.016G075200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.