Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06200 162 / 2e-50 CASP4 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) AT3G11550 157 / 9e-49 CASP2 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) AT2G36100 139 / 2e-41 CASP1 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1) AT2G27370 138 / 8e-41 CASP3 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) AT1G14160 99 / 6e-26 Uncharacterised protein family (UPF0497) (.1) AT5G15290 97 / 3e-25 CASP5 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) AT5G44550 62 / 5e-12 Uncharacterised protein family (UPF0497) (.1) AT1G03700 59 / 5e-11 Uncharacterised protein family (UPF0497) (.1) AT4G03540 57 / 2e-10 Uncharacterised protein family (UPF0497) (.1) AT1G17200 55 / 2e-09 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G075400 [exp] 202 / 2e-66 AT5G06200 179 / 2e-57 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.006G208800 [exp] 199 / 5e-65 AT5G06200 201 / 7e-66 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.012G032300 [exp] 111 / 6e-31 AT5G15290 207 / 1e-68 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Potri.009G160000 [exp] 112 / 1e-30 AT2G27370 146 / 2e-43 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) Potri.008G088700 [exp] 92 / 2e-23 AT1G14160 163 / 3e-51 Uncharacterised protein family (UPF0497) (.1) Potri.004G043300 [exp] 63 / 1e-12 AT4G03540 103 / 2e-28 Uncharacterised protein family (UPF0497) (.1) Potri.013G131700 [exp] 60 / 5e-11 AT1G03700 159 / 9e-50 Uncharacterised protein family (UPF0497) (.1) Potri.019G100300 [exp] 58 / 1e-10 AT1G03700 150 / 6e-47 Uncharacterised protein family (UPF0497) (.1) Potri.011G052100 [exp] 58 / 1e-10 AT4G03540 100 / 2e-27 Uncharacterised protein family (UPF0497) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021332 [exp] 174 / 4e-55 AT2G36100 229 / 1e-76 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1) Lus10017008 [exp] 173 / 8e-55 AT2G27370 228 / 5e-76 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) Lus10021333 [exp] 164 / 2e-51 AT3G11550 246 / 1e-83 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10017009 [exp] 161 / 1e-45 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10004205 [exp] 142 / 9e-43 AT3G11550 232 / 8e-78 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10029409 [exp] 141 / 3e-42 AT3G11550 234 / 9e-79 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10033007 [exp] 110 / 3e-30 AT5G15290 216 / 3e-72 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Lus10015375 [exp] 100 / 1e-26 AT5G15290 219 / 1e-73 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Lus10037160 [exp] 96 / 2e-24 AT1G14160 214 / 9e-71 Uncharacterised protein family (UPF0497) (.1) Lus10042471 [exp] 54 / 6e-09 AT1G17200 242 / 6e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [poplar] [flax] Marvel-like PF04535 [poplar] [flax] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Potri.016G075300.1 pacid=42810058 polypeptide=Potri.016G075300.1.p locus=Potri.016G075300 ID=Potri.016G075300.1.v4.1 annot-version=v4.1 ATGTCAGCTAGAGTTGATATTCCTGCTGATACAAGCGCTGCTGCTAAAGGAACAGCACCTCTAATAGCAGCTTCCACCCATGTGAAGGGAGGATACAAGA AGGGGCTTGCTATCTTCGACCTCGTTCTGAGGTTAGGTGCTGTGGTGACTGCTCTAGCTGCCGCTGCCACCATGGGAACTACTGACCAGACCCTTCCCTT CTTCACTCAGTTCTTCCAATTCCAAGCAAGCTATGATGATCTTCCCACCTTTCAGTTCTTTGTGATTGCAATGGCAATAGTTTCTGGCTATCTAGTCCTT TCCCTTCCGTTCTCCATTGTCGCCATTATTCGTCCACACGCTACTGGACCAAGGCTCCTCCTCATTATTTTGGACACTGTCGCCCTAACTCTAAACACGG CTGCCGCAGCGGCTGCTGTCGCCATAGTCGACTTAGCTCAAAATGGCAACTCAAGCGCAAATTGGCTTGGTATCTGCCAACAATTTGGTGATTTTTGCCA GAAAGCCAGCGGGGCTGTGGTGGCATCCTTCATTGCAGCTGGTGTGCTCTTGTTTTTAATTGTGATTTCTGCTTTAGCTCTCCGAAAGCGTTGA
AA sequence Show only first row Show all	>Potri.016G075300.1 pacid=42810058 polypeptide=Potri.016G075300.1.p locus=Potri.016G075300 ID=Potri.016G075300.1.v4.1 annot-version=v4.1 MSARVDIPADTSAAAKGTAPLIAASTHVKGGYKKGLAIFDLVLRLGAVVTALAAAATMGTTDQTLPFFTQFFQFQASYDDLPTFQFFVIAMAIVSGYLVL SLPFSIVAIIRPHATGPRLLLIILDTVALTLNTAAAAAAVAIVDLAQNGNSSANWLGICQQFGDFCQKASGAVVASFIAAGVLLFLIVISALALRKR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06200		CASP4	Casparian strip membrane domai...		Potri.016G075300 [exp]	0	1
AT5G48920		TED7	tracheary element differentiat...		Potri.005G060700 [exp]	3.31	0.7428
AT3G48260		WNK3	with no lysine (K) kinase 3 (....		Potri.012G086700 [exp]	15.16	0.6449	WNK3.2
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Potri.014G159400 [exp]	17.14	0.6957	AGO902
					Potri.008G213600 [exp]	17.66	0.6935
AT3G12890		ASML2	activator of spomin::LUC2 (.1)		Potri.001G136700 [exp]	23.19	0.7363
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Potri.003G162801 [exp]	23.23	0.6934
AT1G71070			Core-2/I-branching beta-1,6-N-...		Potri.010G114800 [exp]	23.81	0.7190
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.015G072400 [exp]	38.72	0.6295
AT3G14470			NB-ARC domain-containing disea...		Potri.018G003502 [exp]	52.47	0.6573
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Potri.005G257300 [exp]	53.69	0.6286

Compare expression of checked genes

Potri.016G075300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.