Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36130 278 / 3e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G44600 155 / 7e-45 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 (.1) AT1G01940 141 / 2e-43 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G67530 142 / 3e-40 ATPUB49 plant U-box 49 (.1) AT4G33060 126 / 1e-34 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G13120 118 / 3e-33 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT3G62030 116 / 2e-32 CYP20-3, ROC4 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) AT2G15790 114 / 1e-30 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) AT3G56070 108 / 2e-30 ROC2 rotamase cyclophilin 2 (.1.2) AT4G38740 108 / 3e-30 ROC1 rotamase CYP 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G146400 [exp] 154 / 3e-44 AT3G44600 1095 / 0.0 cyclophilin 71, cyclophilin71 (.1) Potri.002G149700 [exp] 140 / 1e-42 AT1G01940 293 / 3e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.014G071600 [exp] 135 / 3e-41 AT1G01940 293 / 2e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G148900 [exp] 138 / 1e-38 AT5G67530 806 / 0.0 plant U-box 49 (.1) Potri.003G167700 [exp] 126 / 2e-36 AT5G13120 277 / 5e-94 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.001G060200 [exp] 124 / 1e-35 AT5G13120 297 / 7e-102 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.002G185200 [exp] 120 / 4e-34 AT3G62030 293 / 2e-100 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) Potri.009G106200 [exp] 117 / 6e-32 AT2G15790 561 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.007G040100 [exp] 116 / 1e-31 AT2G15790 551 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021335 [exp] 269 / 7e-94 AT2G36130 286 / 1e-100 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10017010 [exp] 261 / 2e-90 AT2G36130 278 / 4e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10020573 [exp] 155 / 2e-44 AT3G44600 1115 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10006271 [exp] 154 / 2e-44 AT3G44600 1110 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10009237 [exp] 132 / 2e-39 AT1G01940 317 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10007794 [exp] 138 / 2e-38 AT5G67530 868 / 0.0 plant U-box 49 (.1) Lus10004731 [exp] 135 / 1e-37 AT5G67530 916 / 0.0 plant U-box 49 (.1) Lus10023860 [exp] 123 / 3e-34 AT2G15790 599 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10020992 [exp] 123 / 3e-34 AT2G15790 598 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10011330 [exp] 120 / 8e-34 AT5G13120 336 / 2e-117 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [poplar] [flax] Cyclophil-like PF00160 [poplar] [flax] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Potri.016G075600.1 pacid=42810212 polypeptide=Potri.016G075600.1.p locus=Potri.016G075600 ID=Potri.016G075600.1.v4.1 annot-version=v4.1 ATGACGGCGGATGCAGAAGGTGGAGCTCCAGAGGTTACTCTGGAGACATCAATGGGTCCTTTCACTGTTGAGTTATACTACAAGCACGCACCAAGAACTT GCAGGAACTTTCTTGAATTATCTCGTCGAGGTTATTATGACAACGTTAAATTTCACCGCATTATTAAGGATTTTATAGTGCAAGGTGGGGATCCAACAGG AACTGGAAGAGGTGGAAAATCCATTTATGGTGATAAGTTTGAGGATGAGATAAACCCCGAGTTAAAGCATACTGGAGCTGGGATCTTATCTATGGCAAAT GCTGGTCCAAATACTAATGGAAGCCAATTTTTCATCACTTTGTCGCCGACTCCATCTCTAGATGGAAAACACACCATTTTTGGAAGAGTATGCAGGGGAA TGGAAATAATCAAGAGACTCGGTAGTGTCCAAACTGACAATAATGATAGGCCTATCCATGATGTGAAGATATTGCGGGCATCTGTCAAAGATTAG
AA sequence Show only first row Show all	>Potri.016G075600.1 pacid=42810212 polypeptide=Potri.016G075600.1.p locus=Potri.016G075600 ID=Potri.016G075600.1.v4.1 annot-version=v4.1 MTADAEGGAPEVTLETSMGPFTVELYYKHAPRTCRNFLELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGKSIYGDKFEDEINPELKHTGAGILSMAN AGPNTNGSQFFITLSPTPSLDGKHTIFGRVCRGMEIIKRLGSVQTDNNDRPIHDVKILRASVKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36130			Cyclophilin-like peptidyl-prol...		Potri.016G075600 [exp]	0	1
AT4G04780		MED21	mediator 21 (.1)		Potri.004G017100 [exp]	4.89	0.8812
AT5G60840			unknown protein		Potri.012G065400 [exp]	12.04	0.8827
AT5G42150			Glutathione S-transferase fami...		Potri.005G242500 [exp]	12.60	0.8787
AT1G26740			Ribosomal L32p protein family ...		Potri.008G090100 [exp]	21.90	0.8710
AT5G51880			2-oxoglutarate (2OG) and Fe(II...		Potri.015G135300 [exp]	24.49	0.8380
AT2G43090			Aconitase/3-isopropylmalate de...		Potri.003G107800 [exp]	26.55	0.8745
AT2G43630			unknown protein		Potri.006G123800 [exp]	33.04	0.8428
AT4G29960			unknown protein		Potri.018G143000 [exp]	35.51	0.8247
AT1G21770			Acyl-CoA N-acyltransferases (N...		Potri.005G178501 [exp]	37.74	0.8587
AT2G35010		ATO1	thioredoxin O1 (.1.2)		Potri.001G159000 [exp]	39.82	0.8335

Compare expression of checked genes

Potri.016G075600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.