Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SPY.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11540 1503 / 0 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G04240 296 / 3e-86 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G56290 68 / 2e-11 EMB2790, PEX5, ATPEX5 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) AT5G63200 66 / 6e-11 tetratricopeptide repeat (TPR)-containing protein (.1) AT2G32450 62 / 1e-09 Calcium-binding tetratricopeptide family protein (.1) AT1G05150 61 / 4e-09 Calcium-binding tetratricopeptide family protein (.1) AT1G22700 55 / 4e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT4G37460 53 / 8e-07 SRFR1 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G27500 51 / 4e-06 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G37590 51 / 4e-06 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G208900 [exp] 1706 / 0 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.019G025600 [exp] 290 / 9e-84 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G051400 [exp] 281 / 1e-80 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G092000 [exp] 69 / 7e-12 AT5G63200 759 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1) Potri.005G234900 [exp] 62 / 2e-09 AT1G05150 1239 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Potri.002G027900 [exp] 59 / 1e-08 AT1G05150 1226 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Potri.007G052200 [exp] 59 / 1e-08 AT4G37460 1333 / 0.0 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G085200 [exp] 58 / 1e-08 AT1G22700 324 / 6e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.011G170000 [exp] 58 / 3e-08 AT5G56290 1046 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021336 [exp] 1538 / 0 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017009 [exp] 1375 / 0 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10004779 [exp] 292 / 1e-84 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003113 [exp] 292 / 2e-84 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003576 [exp] 284 / 2e-81 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003112 [exp] 69 / 9e-13 AT3G04240 305 / 2e-98 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010627 [exp] 68 / 3e-11 AT2G32450 1148 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10033182 [exp] 67 / 4e-11 AT2G32450 1323 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10013661 [exp] 66 / 1e-10 AT5G63200 801 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1) Lus10021972 [exp] 61 / 4e-10 AT1G22700 312 / 5e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat CL0020 [poplar] [flax] TPR PF13424 [poplar] [flax] TPR_12 Tetratricopeptide repeat CL0113 [poplar] [flax] GT-B PF13844 [poplar] [flax] Glyco_transf_41 Glycosyl transferase family 41
Representative CDS sequence Show only first row Show all	>Potri.016G075700.2 pacid=42809903 polypeptide=Potri.016G075700.2.p locus=Potri.016G075700 ID=Potri.016G075700.2.v4.1 annot-version=v4.1 ATGGCGTGGACAGAGAATGATGCTGGTAGTGTGAGAGAGAAGGAATTGATTGAAGATAATGGTTTCTTGAAAGGATCACAGCCTTCAACTGGCACTAGTG GCTCTCCTGTTGTTTCATCTCCAGTGCAGAAGGGGTTTGAAGGGAAGGATGCACTCTCTTATGCCAATATTCTTCGGTCCAGAAATAAATTTGCAGATGC TCTTGCTCTTTACGAGAGTGTCCTGGAGAAAGATAGTGGAATTGTTGAGGCTTATATTGGAAAAGGAATATGCTTGCAGATGCAGAACATGGGAAGGCTT GCTTTTGATAGTTTTGCTGAAGCTATCAAGCTGGACCCACAGAATGCATGTGCCCTGACACATTGCGGTATATTGTACAAAGATGAGGGTCGTCTGTTAG AGGCTGCTGAGTCGTACCACAAGGCTCTGAAAGCTGATCTTTCATACAAGCCAGCTTCGGAGTGCCTAGCCATTGTTTTAACAGATCTTGGAACCAGCTT AAAGCTCTCTGGTAATACACAAGAGGGAATTCAAAAGTATTATGAAGCTCTTAAAGTAGATCCACACTATGCGCCTGCATATTATAACCTTGGTGTTGTA TACTCTGAAATGATGCAATATGACACTGCCCTTAGTTGCTATGAGAAGGCTGCAATGGAGAGGCCCATGTATGCTGAAGCATATTGCAACATGGGTGTCA TCTATAAAAACAGAGGTGACTTAGAATCAGCCATTGCCTGTTATGAGAGGTGTCTAGCCGTGTCACCAAACTTTGAGATTGCAAAGAATAATATGGCAAT AGCATTGACAGATTTCGGAACAAAAGTTAAACTGGAGGGAGATATCAGCCAAGGTGTGGCATATTACAAAAAGGCTTTGTATTATAACTGGCACTATGCT GATGCTATGTATAATCTCGGTGTTGCTTATGGCGAAATGCTGAAGTTTGAGATGGCAATTGTGTTCTATGAACTTGCTTTCAACTTCAATCCTCATTGTG CTGAGGCATGCAACAACTTAGGTGTAATATACAAAGACCGAGACAACCTTGATAAAGCCGTGGAGTGTTATCAGTTAGCTTTATCAATCAAACCAAACTT CTCACAATCATTGAACAACCTTGGTGTTGTCTACACAGTCCAGGGTAAAATGGATGCTGCTGCAAGCATGATTGAGAAAGCTATCATGGCAAATCCCACA TATGCTGAAGCATATAATAACTTAGGAGTTCTTTATAGAGATGCTGGCAATATATCTATGGCCATTAGTGCTTATGAGCAATGCCTGGAGATAGATCCTG ATTCTCGCAATGCAGGCCAGAATCGGTTGCTTGCAATGAACTACATAAATGAGGGACATGATGATAAGCTTTTTGAGGCTCATAGGGACTGGGGTAGGCG CTTTATGAGATTGTATCCACAGTACACTTCATGGGACAACCCAAAAGTTCCAGATAGACCTCTTGTGATTGGATATGTGTCTCCGGATTATTTTACTCAT TCTGTATCTTATTTTATTGAGGCCCCTCTTGTCTATCATGTCTATGCAAATTACAAGGTGGTTGTTTATTCAGCAGTTGTGAAGCCTGATGCAAAAACGA ATAGGTTTAAGGAGAAAGTCTTAAAAAGGGGTGGGATATGGAGGGATATATACGGGATTGATGAGAAGAAGGTTGCAATCATGGTCAGAGAAGATAAAGT TGACATATTGGTAGAACTCACTGGACATACAGCTAACAATAAGTTGGGAATGATGGCATGCCGGCCAGCACCTGTTCAGGTGACTTGGATTGGCTACCCA AATACAACTGGCTTGCCTACCATTGATTACAGAATTACTGATTCATTCGCTGACCCTCCTGATACTAAACAAAAGCATGTTGAGGAGTTGATTCGACTAC CAGAATGCTTCCTTTGTTATATACCTTCACCAGAGGCTGGGCCTGTTGCTCCAACTCCTGCTCTTTCGAATGGCTTCATCACATTTGGTAGCTTTAATAA TTTGGCAAAGATAACACCTAAGGTATTGCAAGTTTGGGCTAGGATACTCTGTGCAGTTCCAAACTCCCGCCTTGTCGTGAAATGCAAGCCATTTTGCTGC GATAGTGTTCGACAAAGATTCCTTACAATGTTGGAGCAGCTGGGGTTGGAACCACTGCATGTTGATCTTCTGCCTCTAATTCTTCTTAACCATGATCACA TGCAAGCTTATTCTCTAATGGACATTAGCTTGGATACTTTTCCATATGCTGGAACAACAACAACATGTGAATCTTTGTACATGGGAGTTCCATGTGTTAC CATGGCTGGTGCTGTACATGCTCACAATGTTGGCGCGAGTCTTCTCAGCAATGTCGGGTTAGGACATCTGGTTGCAAAAAATGAAGAGGAATATGTTCAA TCGGCACTGCAGCTGGCTTCAGACATTGCGGCTCTCTCGAACTTGAGGATGAGTCTCCGGGACCTTATGTCTAAATCTCCTGTTTGTGATGGACCAAATT TTACTCTTGGTTTAGAGACAACATACCGGAACATGTGGCACAGATACTGTAAGGGTGATGTGCCATCTTTAAGGCGGATAGAATTGCTACAACAGCAGGA GGTTCCCAAGGAGGTACCTATCAAGAACACTGATTCAACAAGGATTACATCCTCAAGAGATGGCCCTCCAGAATCCATCAAAGCTAATGGATTTAGTGCA GTCTTACTGCCCAAGGTCGATCATACTATAAACTTAGGCTAG
AA sequence Show only first row Show all	>Potri.016G075700.2 pacid=42809903 polypeptide=Potri.016G075700.2.p locus=Potri.016G075700 ID=Potri.016G075700.2.v4.1 annot-version=v4.1 MAWTENDAGSVREKELIEDNGFLKGSQPSTGTSGSPVVSSPVQKGFEGKDALSYANILRSRNKFADALALYESVLEKDSGIVEAYIGKGICLQMQNMGRL AFDSFAEAIKLDPQNACALTHCGILYKDEGRLLEAAESYHKALKADLSYKPASECLAIVLTDLGTSLKLSGNTQEGIQKYYEALKVDPHYAPAYYNLGVV YSEMMQYDTALSCYEKAAMERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDFGTKVKLEGDISQGVAYYKKALYYNWHYA DAMYNLGVAYGEMLKFEMAIVFYELAFNFNPHCAEACNNLGVIYKDRDNLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIMANPT YAEAYNNLGVLYRDAGNISMAISAYEQCLEIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGRRFMRLYPQYTSWDNPKVPDRPLVIGYVSPDYFTH SVSYFIEAPLVYHVYANYKVVVYSAVVKPDAKTNRFKEKVLKRGGIWRDIYGIDEKKVAIMVREDKVDILVELTGHTANNKLGMMACRPAPVQVTWIGYP NTTGLPTIDYRITDSFADPPDTKQKHVEELIRLPECFLCYIPSPEAGPVAPTPALSNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC DSVRQRFLTMLEQLGLEPLHVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGAVHAHNVGASLLSNVGLGHLVAKNEEEYVQ SALQLASDIAALSNLRMSLRDLMSKSPVCDGPNFTLGLETTYRNMWHRYCKGDVPSLRRIELLQQQEVPKEVPIKNTDSTRITSSRDGPPESIKANGFSA VLLPKVDHTINLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.016G075700 [exp]	0	1	Pt-SPY.1
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Potri.006G078000 [exp]	1.00	0.8939	HEN2.1
AT5G22450			unknown protein		Potri.004G203500 [exp]	1.41	0.8815
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Potri.008G213000 [exp]	2.82	0.8609
AT1G17110		UBP15	ubiquitin-specific protease 15...		Potri.011G095200 [exp]	3.46	0.8384	Pt-UBP15.2
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Potri.002G137800 [exp]	3.87	0.8583
AT1G33420			RING/FYVE/PHD zinc finger supe...		Potri.004G134700 [exp]	6.24	0.8050
AT3G08570			Phototropic-responsive NPH3 fa...		Potri.016G139900 [exp]	6.24	0.8378
AT5G58410			HEAT/U-box domain-containing p...		Potri.019G126000 [exp]	6.32	0.8571
AT5G64420			DNA polymerase V family (.1)		Potri.001G285600 [exp]	6.70	0.8352
AT3G13690			Protein kinase protein with ad...		Potri.006G150100 [exp]	7.07	0.8528

Compare expression of checked genes

Potri.016G075700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.