Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12910 345 / 2e-118 LWD1, ATAN11 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) AT3G26640 336 / 1e-114 LWD2 LIGHT-REGULATED WD 2, Transducin/WD40 repeat-like superfamily protein (.1) AT5G24520 312 / 3e-105 ATTTG1, URM23, TTG1 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) AT1G29260 56 / 9e-09 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT4G35050 56 / 2e-08 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT2G16780 53 / 2e-07 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT5G58230 52 / 3e-07 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G18830 47 / 1e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT3G63460 47 / 2e-05 EMB2221 transducin family protein / WD-40 repeat family protein (.1.2.3) AT2G19540 44 / 0.0001 Transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G209000 [exp] 545 / 0 AT1G12910 391 / 3e-136 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G140700 [exp] 349 / 7e-120 AT1G12910 677 / 0.0 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G220500 [exp] 348 / 2e-119 AT1G12910 679 / 0.0 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G006100 [exp] 319 / 4e-108 AT5G24520 577 / 0.0 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.015G002600 [exp] 312 / 2e-105 AT5G24520 565 / 0.0 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.011G066600 [exp] 55 / 2e-08 AT1G29260 379 / 3e-134 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.004G057600 [exp] 54 / 6e-08 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.004G175300 [exp] 50 / 9e-07 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.002G216200 [exp] 49 / 2e-06 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041500 [exp] 353 / 3e-121 AT1G12910 641 / 0.0 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Lus10023228 [exp] 280 / 7e-93 AT5G24520 505 / 0.0 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10012593 [exp] 254 / 6e-84 AT1G12910 458 / 2e-164 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Lus10007274 [exp] 57 / 7e-09 AT1G29260 529 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10029221 [exp] 56 / 1e-08 AT1G29260 531 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10005074 [exp] 52 / 2e-07 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10027848 [exp] 52 / 4e-07 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10020917 [exp] 51 / 6e-07 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033460 [exp] 50 / 1e-06 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020916 [exp] 50 / 1e-06 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.016G075800.1 pacid=42809985 polypeptide=Potri.016G075800.1.p locus=Potri.016G075800 ID=Potri.016G075800.1.v4.1 annot-version=v4.1 ATGAAAGCAACCATGGAAAGCTCTTCACAGAAAGGACCAGTCATCTGCACTTACGTAGCTCAATGGCCTATATATTCACTAGCCTGGTCTGCCCGACGTG ACAAAAAAACACGTCTTGCCATAGGAAGTTTCCTTGAAGACTATAGCAACAAGGTGGAAATTGTTCAATTCAACAGCGACACTTTTGATTTCACCACCGA TAACCGCCTAATATTCGATCACCCTTATTCACCCACAAACCTGATGTTCTTCCCCTCCGAGGATGTTGCAAATCCTGATATCATCATCACCTCCGGGGAC TACATGCGTATATGGCAAATTTACGATGACCGAATTGAGTTGAAGTCTCTCCTAAATGGCAATAAGTGTAGTGAATTCAACTCTGCCATAACATCTTTTG ATTGGGCTGATTTTGATGTTCATCGTGTGGTCAGTTCGAGTGTTGACTCCACCATTGTTGTTTGGGATATAGAGAAGGAAACTATATATGCTCAATTAGT TGCACATGATAAAGAAGTGAATGATATTTCATGGGGTTGGTTCAATATTTTCGCATCAGTATCAGGTGATGGTTCAGTTAGGGTTTGCGATTTAAGAAAA AAAGAGAGATCAACAATAATTTATGAAAATCCAATGCAGGATTGTTCTTTGTTAAGGCTAGAGTGGAACAAAAGTGACCCGAGATTTATAGCCACAGTCG GCATGAACAGTAACAAGGTTGTAATTTTGGACATTCGCTTTCCTTCAACTCCTTTAATGGAGCTTAGCAAGCATAGGGCAAGTGTGAATTCTATATCCTG GGCTCCATGTACAGGACGAAAGATATGCTCGGTAGGTGATGATTCAAGGGCTTTGATATGGGATGTGGCTAGTAAGGCTGGAAACGGACCAGAAAACATT ATAGGCCAGGCGGAACCTGAAATGTGGTATGGATCAGTGGGTGGGATCAATAATATGCGTTGGTCTCCGGTGGAGATGGATTGGATTGCTATTGCTTTTC TGACCAAGTTACAACTCTTGAAGGTTTAG
AA sequence Show only first row Show all	>Potri.016G075800.1 pacid=42809985 polypeptide=Potri.016G075800.1.p locus=Potri.016G075800 ID=Potri.016G075800.1.v4.1 annot-version=v4.1 MKATMESSSQKGPVICTYVAQWPIYSLAWSARRDKKTRLAIGSFLEDYSNKVEIVQFNSDTFDFTTDNRLIFDHPYSPTNLMFFPSEDVANPDIIITSGD YMRIWQIYDDRIELKSLLNGNKCSEFNSAITSFDWADFDVHRVVSSSVDSTIVVWDIEKETIYAQLVAHDKEVNDISWGWFNIFASVSGDGSVRVCDLRK KERSTIIYENPMQDCSLLRLEWNKSDPRFIATVGMNSNKVVILDIRFPSTPLMELSKHRASVNSISWAPCTGRKICSVGDDSRALIWDVASKAGNGPENI IGQAEPEMWYGSVGGINNMRWSPVEMDWIAIAFLTKLQLLKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.016G075800 [exp]	0	1
AT5G48810		B5#3, ATB5-B, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.014G019200 [exp]	2.00	0.9007
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Potri.002G052900 [exp]	2.44	0.8613	Pt-RANGAP1.2
AT1G34580			Major facilitator superfamily ...		Potri.002G095900 [exp]	2.64	0.9125	HT1.1
AT4G24204			RING/U-box superfamily protein...		Potri.007G050500 [exp]	10.90	0.8336
					Potri.006G256900 [exp]	11.83	0.8527
AT2G36290			alpha/beta-Hydrolases superfam...		Potri.008G021000 [exp]	14.42	0.8181
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Potri.019G015768 [exp]	17.02	0.8292
AT2G47115			unknown protein		Potri.014G115200 [exp]	20.19	0.8191
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.003G176800 [exp]	26.45	0.8062	CHS.5
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Potri.010G213000 [exp]	34.46	0.7944	CHI.1

Compare expression of checked genes

Potri.016G075800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.