Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22380 226 / 2e-74 NAC ANAC090 NAC domain containing protein 90 (.1) AT3G44350 211 / 2e-68 NAC ANAC061 NAC domain containing protein 61 (.1.2) AT2G02450 144 / 8e-41 NAC LOV1, ANAC034, ANAC035 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) AT2G17040 140 / 3e-40 NAC ANAC036 NAC domain containing protein 36 (.1) AT1G26870 137 / 1e-37 NAC FEZ, ANAC009 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT4G17980 130 / 9e-37 NAC ANAC071 NAC domain containing protein 71 (.1) AT5G08790 129 / 4e-36 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G69490 129 / 5e-36 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT5G39820 129 / 2e-35 NAC ANAC094 NAC domain containing protein 94 (.1) AT4G35580 130 / 8e-35 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G209200 [exp] 359 / 2e-126 AT5G22380 241 / 3e-80 NAC domain containing protein 90 (.1) Potri.016G076100 [exp] 269 / 5e-91 AT5G22380 214 / 2e-69 NAC domain containing protein 90 (.1) Potri.001G218800 [exp] 230 / 2e-75 AT5G22380 272 / 3e-92 NAC domain containing protein 90 (.1) Potri.009G019200 [exp] 227 / 2e-74 AT3G44350 257 / 1e-86 NAC domain containing protein 61 (.1.2) Potri.003G046700 [exp] 145 / 5e-41 AT2G02450 318 / 2e-106 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Potri.009G141600 [exp] 138 / 2e-39 AT2G17040 314 / 6e-108 NAC domain containing protein 36 (.1) Potri.004G230800 [exp] 138 / 1e-38 AT2G02450 311 / 2e-103 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Potri.004G126901 [exp] 138 / 3e-38 AT5G39820 305 / 1e-101 NAC domain containing protein 94 (.1) Potri.017G082000 [exp] 135 / 2e-37 AT1G26870 299 / 3e-98 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020643 [exp] 229 / 3e-75 AT5G22380 283 / 1e-96 NAC domain containing protein 90 (.1) Lus10004846 [exp] 226 / 3e-74 AT5G22380 275 / 1e-93 NAC domain containing protein 90 (.1) Lus10029410 [exp] 188 / 9e-59 AT5G22380 171 / 1e-52 NAC domain containing protein 90 (.1) Lus10008420 [exp] 145 / 5e-41 AT2G02450 320 / 2e-106 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10008419 [exp] 146 / 7e-41 AT2G02450 327 / 7e-109 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10003367 [exp] 145 / 5e-40 AT2G02450 333 / 3e-110 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10023208 [exp] 137 / 3e-38 AT2G02450 321 / 3e-108 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10037178 [exp] 138 / 1e-37 AT5G39820 306 / 3e-101 NAC domain containing protein 94 (.1) Lus10036749 [exp] 137 / 1e-37 AT1G26870 306 / 4e-100 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10008897 [exp] 134 / 3e-37 AT2G02450 315 / 5e-106 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.016G076000.1 pacid=42809842 polypeptide=Potri.016G076000.1.p locus=Potri.016G076000 ID=Potri.016G076000.1.v4.1 annot-version=v4.1 ATGGATATGCCAGGGTTTCGTTTTTACCCAACAGAAGAAGAACTGGTCTCATTTTATCTGCGTAACAAGCTTGAAGCAAGGAGAGAGGACCTGCTACGGG TAATGGACCGTCTTATACCGGTCCTTGATATATATGGGTTCAATCCATGGGAGCTTCCACAATTTTCAGGTGATTTGTGCCATGGAGACCCTGAAGAATG TTTTTTCTTCATTCCAAGGCAAAAAAGCGAAGCCCATGGAGGGAGGCCAAAGCGACTCACGGCTACTGGGTATTGGAAAGCTACTGGCTCTCCAGGTTCT GTATACTCTTCCAAAAGTAATCGTTGTATTGGCGAGAAAAGAACCATGGTGTTCTATAATGGAAGGGCTCCAAATGGACAAAAAACTGACTGGAAAATGA ATGAATATAAAGCTATAAAAGAAGAAGAAGCATCCTCTTCAAGTGGTGCATATCCAAAGCTAAGAGAAGAATTCAGCTTGTGTCGTGTGTATAAGAAGTC CAACTTCGTGCGAGCATTTGATAGACGGCCATTAGGAGTGGAGAATATGGTTCAGATGAGAGCTCAAACAGCCCCAGATGATGGGGCCACAGCATTTCAT CAAAGCCCTTCAGCGGGGGAGATAACATGCTCACACGATAGTTCAACCTCAGGACACCACGGCCAGCCCTTCCAAACTGGAGAAATCAGCGACATGGCTA TTGATAATGAACCTATCTGGGAGTGGGAGCAATTAGATCAGTACTGGAGTAAGCAGGGACATTCAGATCAACAATGA
AA sequence Show only first row Show all	>Potri.016G076000.1 pacid=42809842 polypeptide=Potri.016G076000.1.p locus=Potri.016G076000 ID=Potri.016G076000.1.v4.1 annot-version=v4.1 MDMPGFRFYPTEEELVSFYLRNKLEARREDLLRVMDRLIPVLDIYGFNPWELPQFSGDLCHGDPEECFFFIPRQKSEAHGGRPKRLTATGYWKATGSPGS VYSSKSNRCIGEKRTMVFYNGRAPNGQKTDWKMNEYKAIKEEEASSSSGAYPKLREEFSLCRVYKKSNFVRAFDRRPLGVENMVQMRAQTAPDDGATAFH QSPSAGEITCSHDSSTSGHHGQPFQTGEISDMAIDNEPIWEWEQLDQYWSKQGHSDQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Potri.016G076000 [exp]	0	1
AT2G34930			disease resistance family prot...		Potri.001G043800 [exp]	5.47	0.8560
AT5G17680			disease resistance protein (TI...		Potri.019G098700 [exp]	9.16	0.8603
					Potri.015G009450 [exp]	9.32	0.6643
AT1G63860			Disease resistance protein (TI...		Potri.019G097720 [exp]	9.79	0.8590
AT5G46470		RPS6	RESISTANT TO P. SYRINGAE 6, di...		Potri.019G097640 [exp]	12.24	0.8554
AT5G17680			disease resistance protein (TI...		Potri.019G097800 [exp]	15.29	0.8274
AT3G07200			RING/U-box superfamily protein...		Potri.001G082200 [exp]	15.62	0.6366
AT5G17680			disease resistance protein (TI...		Potri.019G098900 [exp]	17.02	0.8222
AT4G16580			Protein phosphatase 2C family ...		Potri.011G102200 [exp]	20.49	0.8042
					Potri.006G238566 [exp]	21.21	0.7210

Compare expression of checked genes

Potri.016G076000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.