Plant FIBer expression Database

Potri.016G076550 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G52570 327 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1)
AT4G10030 118 / 3e-31 alpha/beta-Hydrolases superfamily protein (.1)
AT4G10050 41 / 0.0005 esterase/lipase/thioesterase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G076601
[exp]
237 / 1e-80 AT3G52570 181 / 1e-57 alpha/beta-Hydrolases superfamily protein (.1)
Potri.016G077066
[exp]
168 / 1e-52 AT3G52570 173 / 1e-53 alpha/beta-Hydrolases superfamily protein (.1)
Potri.019G074600
[exp]
118 / 5e-31 AT4G10030 485 / 5e-172 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016992
[exp]
371 / 5e-128 AT3G52570 433 / 1e-150 alpha/beta-Hydrolases superfamily protein (.1)
Lus10021315
[exp]
333 / 4e-113 AT3G52570 397 / 2e-136 alpha/beta-Hydrolases superfamily protein (.1)
Lus10022691
[exp]
217 / 3e-71 AT3G52570 224 / 5e-73 alpha/beta-Hydrolases superfamily protein (.1)
Lus10014220
[exp]
197 / 1e-61 AT3G11510 236 / 4e-78 Ribosomal protein S11 family protein (.1)
Lus10022689
[exp]
134 / 2e-39 AT3G52570 182 / 5e-57 alpha/beta-Hydrolases superfamily protein (.1)
Lus10014222
[exp]
128 / 3e-38 AT3G52570 130 / 1e-38 alpha/beta-Hydrolases superfamily protein (.1)
Lus10041047
[exp]
124 / 4e-33 AT4G10030 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Lus10006176
[exp]
66 / 4e-12 AT4G10030 238 / 7e-73 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0028 AB_hydrolase PF12697 Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence
>Potri.016G076550.1 pacid=42810559 polypeptide=Potri.016G076550.1.p locus=Potri.016G076550 ID=Potri.016G076550.1.v4.1 annot-version=v4.1
ATGGTGCTTGTGGATATGAGGAACCATGGCAAATCTGTTGATATAGAGGGATTAGACCCACCTCATAATATGTTTAATGCGGCTATGGATGTGGCTAATT
TGGTGAAAGAGAAAGGTTGGGAATGGCCTGATGTTGTTATTGGTCATTCTATGGGAGGCAAAGTTGCTTTGCAATTTGCTGAGAGCTGCACTCGTGGTGA
TTATGGTCATTCTGTTTCTTTTCCTAAACAGCTGTGGGTACTGGATTCTGTGCCTGTAGAAGTAAGTCCTGAATATAGTGATGGAGAAGTTGAAAAAGTT
TTGAGGACCTTGCATAGTTTACCCTCACCAATCCCATCACGAAGCTGGCTTGTGAACCATATGATTCAACTTGGTTTCTCAAAATCATTATCAGAATGGA
TTGGAAGCAACCTCAAGAAATCTGGAGAGCAAGAGAGTTGGGCCTTTGATCTCAAAGGTGCTATCCAGATGTTCAACTTTTACAGTCTAAATAGTGAATA
TAAAAATTCTATAAGGAGACTTCATATTGGACTAGTAGTTGCAGAGAAGAGTGACCGCTGGGATCCAGATTTAATTCAGCGACTTGAAAGCCTTTCTTGC
CGGACCAGGGATGAATCTGAGGGGAAGTTCTCGCTTCATGTTCTTCCAAATTCAGGGCACTGGGTTCATGTGGACAATCCAAAGCGACTTCTTGAGATTG
TGACTCCCAGGATGGCTTCCCTTTCGACATAA
AA sequence
>Potri.016G076550.1 pacid=42810559 polypeptide=Potri.016G076550.1.p locus=Potri.016G076550 ID=Potri.016G076550.1.v4.1 annot-version=v4.1
MVLVDMRNHGKSVDIEGLDPPHNMFNAAMDVANLVKEKGWEWPDVVIGHSMGGKVALQFAESCTRGDYGHSVSFPKQLWVLDSVPVEVSPEYSDGEVEKV
LRTLHSLPSPIPSRSWLVNHMIQLGFSKSLSEWIGSNLKKSGEQESWAFDLKGAIQMFNFYSLNSEYKNSIRRLHIGLVVAEKSDRWDPDLIQRLESLSC
RTRDESEGKFSLHVLPNSGHWVHVDNPKRLLEIVTPRMASLST

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G52570 alpha/beta-Hydrolases superfam... Potri.016G076550
[exp]
0 1
AT3G62360 Carbohydrate-binding-like fold... Potri.002G194000
[exp]
4.00 0.8576
AT1G47550 SEC3A exocyst complex component sec3... Potri.002G131400
[exp]
10.39 0.8431
AT5G51280 DEAD-box protein abstrakt, put... Potri.005G047301
[exp]
12.72 0.8278
AT2G32320 tRNAHis guanylyltransferase (.... Potri.002G233300
[exp]
13.49 0.7411
AT1G77680 Ribonuclease II/R family prote... Potri.005G174800
[exp]
20.12 0.7960
AT5G13910 AP2_ERF LEAFY PETIOLE ... LEAFY PETIOLE, Integrase-type ... Potri.001G157100
[exp]
20.29 0.7627
AT4G08460 Protein of unknown function (D... Potri.005G172300
[exp]
21.00 0.8260
AT5G07720 Galactosyl transferase GMA12/M... Potri.012G068300
[exp]
25.29 0.8290
AT5G24810 ABC1 family protein (.1.2) Potri.012G082950
[exp]
28.49 0.7947
AT3G09090 DEX1 DEFECTIVE IN EXINE FORMATION 1... Potri.006G096100
[exp]
36.82 0.8128 DEX1.1

Potri.016G076550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.