Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52600 754 / 0 ATCWINV2 cell wall invertase 2 (.1.2) AT2G36190 735 / 0 ATCWINV4 cell wall invertase 4 (.1) AT3G13790 610 / 0 ATCWINV1, ATBFRUCT1 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) AT1G55120 582 / 0 ATFRUCT5, ATCWINV3 6-fructan exohydrolase, beta-fructofuranosidase 5 (.1.2.3) AT3G13784 530 / 0 ATCWINV5 cell wall invertase 5 (.1) AT5G11920 502 / 4e-173 ATCWINV6 6-&1-fructan exohydrolase (.1.2) AT1G12240 457 / 7e-154 ATBETAFRUCT4, VAC-INV VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) AT1G62660 448 / 7e-151 Glycosyl hydrolases family 32 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G077500 [exp] 1031 / 0 AT3G52600 751 / 0.0 cell wall invertase 2 (.1.2) Potri.006G210600 [exp] 979 / 0 AT3G52600 770 / 0.0 cell wall invertase 2 (.1.2) Potri.006G227400 [exp] 563 / 0 AT3G13790 703 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G227500 [exp] 558 / 0 AT3G13790 660 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.003G112600 [exp] 468 / 3e-158 AT1G12240 882 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.015G127100 [exp] 460 / 1e-155 AT1G62660 712 / 0.0 Glycosyl hydrolases family 32 protein (.1) Potri.003G126300 [exp] 457 / 3e-154 AT1G12240 819 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014219 [exp] 786 / 0 AT2G36190 711 / 0.0 cell wall invertase 4 (.1) Lus10014217 [exp] 751 / 0 AT2G36190 688 / 0.0 cell wall invertase 4 (.1) Lus10021339 [exp] 741 / 0 AT2G36190 691 / 0.0 cell wall invertase 4 (.1) Lus10017015 [exp] 738 / 0 AT2G36190 683 / 0.0 cell wall invertase 4 (.1) Lus10008392 [exp] 591 / 0 AT3G13790 756 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10037633 [exp] 566 / 0 AT3G13790 704 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10015614 [exp] 555 / 0 AT3G13790 658 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10037632 [exp] 553 / 0 AT3G13790 648 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10001529 [exp] 538 / 0 AT3G13790 598 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10015613 [exp] 525 / 0 AT3G13790 641 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0143 [poplar] [flax] B_Fructosidase PF00251 [poplar] [flax] Glyco_hydro_32N Glycosyl hydrolases family 32 N-terminal domain CL0004 [poplar] [flax] Concanavalin PF08244 [poplar] [flax] Glyco_hydro_32C Glycosyl hydrolases family 32 C terminal
Representative CDS sequence Show only first row Show all	>Potri.016G077400.2 pacid=42810211 polypeptide=Potri.016G077400.2.p locus=Potri.016G077400 ID=Potri.016G077400.2.v4.1 annot-version=v4.1 ATGATGGCTATGCCACACACTCTCTCAGTTCTTGCTCTGTTTGCTTTGCTTTTTGTGCTAACTAATAATGGAGCCGAGGCTTCTCATAAGATTTATTCTG AGTATCAGACTCTTAGTGTTGAGAACGTGAACCAAGTCCATAGAACTGGGTATCACTTTCAGCCTCCAAGGCACTGGATCAACGATCCAAACGCGCCTAT GTACTACAAGGGGCTATACCATCTATTCTACCAATACAACCCCAAAGGTGCAGTGTGGGGTAACATTGTTTGGGCTCATTCAGTTTCGAAGGATTTGATC AATTGGGAATCCCTTGAGCCTGCAATCTACCCTTCTAAATGGTTTGATAATTATGGATGTTGGTCTGGCTCAGCGACGGTCCTTCCAGATGGTGAGCCTG TTATATTCTACACGGGTATTGTGGATAAAAATAACAGTCAGATTCAAAACTACGCAGTACCCGCAAACTTGTCAGATCCATATCTTCGTGAATGGGTTAA GCCTGATGATAATCCGATAGTGAACCCGGATGCTAACGTAAATGGTAGTGCATTCCGTGATCCAACCACTGCTTGGTGGGCTGATGGGCATTGGAGGATT TTGATAGGCAGCAGGAGGAAACATAGAGGGGTTGCATATTTGTACAGGAGTAAAGATTTTAAGAAATGGGTCAAGGCTAAGCATCCGTTACATTCAGTTC AGGGTACAGGTATGTGGGAATGCCCAGATTTTTACCCCGTTTCATTATCCGGCGAAAACGGGTTGGATCCTTCAGTTATGGGACAAAATGTGAAACATGT ATTGAAGGTTAGCCTAGATATGACAAGATACGAATACTATACAATGGGTACATACGATAAGAAGAAGGACAAGTATTTTCCTGATGAGGGCTTAGTTGAT GGTTGGGCTGGTCTCAGGTTAGATTATGGAAACTTTTATGCTTCTAAGACGTTCTTTGACCCAAGCACAAATAGAAGGATTTTGTGGGGTTGGGCTAATG AGTCTGATGATCCTCAAAAAGATAAGGACAAAGGGTGGGCAGGAATTCAGTTGATTCCAAGGAAGGTGTGGCTAGATCCTAGTGGAAAGCAATTGCTACA GTGGCCTGTTGCAGAATTAGAGAAATTGAGAGGGCACAATGTTCAACTGAGCAATCAAATGCTTGACCAAGGCAACCATGTTGAAGTTAAAGTCATCACT GCTGCTCAGGCTGATGTTGATGTAACCTTTTCTTTCTCAAGCTTGGACAAAGCTGAGCCTTTTGATCCTAAATGGGCTAAGCTCGATGCACTTGATGTAT GTGCCCAAAAGGGTTCCAAAGATCCTGGTGGACTGGGGCCCTTTGGACTCTTGACATTAGCTTCAGAAAACCTTGAAGAATTCACTCCTGTCTTCTTTAG AGTATTTAAAGCAGCAGACAAGCATAAAGTTCTTCTGTGCTCTGATGCAAGGAGCTCTTCCTTAGGTAAAGAACTATATAAACCATCTTTTGCTGGATTT GTTGATGTTGATTTAACCGACAAGAAACTTTCGCTCAGAAGTTTGATTGACCACTCTGTTGTAGAGAGTTTTGGAGCTGGAGGAAGAATTGCCATCTCAT CTAGGGTTTATCCAACTATTGCAGTCTTTGAAAAGGCTCACTTATACGTGTTCAACAATGGCAGCGAGACCATCACAGTGAAGAATCTTAATGCTTGGAG CATGAACACGCCTGTCATGAATGTTCCTGTAAAGAGTTGA
AA sequence Show only first row Show all	>Potri.016G077400.2 pacid=42810211 polypeptide=Potri.016G077400.2.p locus=Potri.016G077400 ID=Potri.016G077400.2.v4.1 annot-version=v4.1 MMAMPHTLSVLALFALLFVLTNNGAEASHKIYSEYQTLSVENVNQVHRTGYHFQPPRHWINDPNAPMYYKGLYHLFYQYNPKGAVWGNIVWAHSVSKDLI NWESLEPAIYPSKWFDNYGCWSGSATVLPDGEPVIFYTGIVDKNNSQIQNYAVPANLSDPYLREWVKPDDNPIVNPDANVNGSAFRDPTTAWWADGHWRI LIGSRRKHRGVAYLYRSKDFKKWVKAKHPLHSVQGTGMWECPDFYPVSLSGENGLDPSVMGQNVKHVLKVSLDMTRYEYYTMGTYDKKKDKYFPDEGLVD GWAGLRLDYGNFYASKTFFDPSTNRRILWGWANESDDPQKDKDKGWAGIQLIPRKVWLDPSGKQLLQWPVAELEKLRGHNVQLSNQMLDQGNHVEVKVIT AAQADVDVTFSFSSLDKAEPFDPKWAKLDALDVCAQKGSKDPGGLGPFGLLTLASENLEEFTPVFFRVFKAADKHKVLLCSDARSSSLGKELYKPSFAGF VDVDLTDKKLSLRSLIDHSVVESFGAGGRIAISSRVYPTIAVFEKAHLYVFNNGSETITVKNLNAWSMNTPVMNVPVKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52600		ATCWINV2	cell wall invertase 2 (.1.2)		Potri.016G077400 [exp]	0	1
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G014501 [exp]	24.00	0.8563
AT5G61850	LFY	LFY3, LFY	LEAFY 3, floral meristem ident...		Potri.015G106900 [exp]	24.73	0.8650	Pt-LEAFY.1
AT4G27300			S-locus lectin protein kinase ...		Potri.011G126251 [exp]	32.49	0.8687
AT5G13090			unknown protein		Potri.012G101200 [exp]	32.49	0.8329
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G014301 [exp]	36.05	0.8316
AT1G03670			ankyrin repeat family protein ...		Potri.013G133800 [exp]	42.00	0.8719
AT1G26310	MADS	CAL1, AGL10, CA...	CAULIFLOWER, AGAMOUS-like 10, ...		Potri.012G100200 [exp]	45.59	0.8151
AT2G44970			alpha/beta-Hydrolases superfam...		Potri.018G085600 [exp]	47.25	0.8362
AT4G27190			NB-ARC domain-containing disea...		Potri.005G042900 [exp]	53.61	0.8261	Pt-RGA-II24.67
AT1G60010			unknown protein		Potri.010G095400 [exp]	54.11	0.8271

Compare expression of checked genes

Potri.016G077400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.